View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11841_low_7 (Length: 420)
Name: NF11841_low_7
Description: NF11841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11841_low_7 |
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Alignment Details
Target: chr6 (Bit Score: 342; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 1 - 404
Target Start/End: Original strand, 1787127 - 1787534
Alignment:
| Q |
1 |
taagacttgtatatgtgactaaatggtgtatctaaatgtttgtgaccacacaagactagggttcctgcaattaggag-aacccacattcacatagtctga |
99 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||| |||||||| |
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| T |
1787127 |
taagacttgtatatgtgactaaatgatgtatctaaatgtttgtgaccatacaagactagggttcctgcaattaggaggaacccacattcacgtagtctga |
1787226 |
T |
|
| Q |
100 |
tatcggaaatcgtctaatcttaattgaatggtcatcttgatcgaa---tcaagattatcctgaatgcgtgactgcgtacttttgttgagcgtagtaaatc |
196 |
Q |
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||| || |||||||| ||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||| |||||| |
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| T |
1787227 |
tattgggaatcgtctgatcttgattgaatggtcatcttgatcgaacaatcaagattatcctgaatgcgtgactgcgtacttttgttgaccgtaataaatc |
1787326 |
T |
|
| Q |
197 |
tagtttgtatagatacaaagaaaatagactgatgtctatttctcatgcagccaacaaatatccttcttgggtcaaactttgaagcaaaactatcagattt |
296 |
Q |
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|||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1787327 |
tagtttgtatagatacaaagaaaatagagtgatgtatatttctcatgcagccaacaaatatccttcttgggtcaaactttgaagcaaaactatcagattt |
1787426 |
T |
|
| Q |
297 |
tggattatctaaacttattgagataggtgaaacatatgctagttcagaagtgagagggacttttggatatgtggatcctgaataccaaagcaaccaccat |
396 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1787427 |
tggattatctaaacttattgagataggtgaaacatatgctagttcagaagtgagagggacttttggatatgtggatcctgaataccaaagcaaccaccat |
1787526 |
T |
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| Q |
397 |
gtaaattc |
404 |
Q |
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|||||||| |
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| T |
1787527 |
gtaaattc |
1787534 |
T |
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