View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11842_low_1 (Length: 451)
Name: NF11842_low_1
Description: NF11842
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11842_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 342; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 10 - 367
Target Start/End: Original strand, 6356168 - 6356525
Alignment:
| Q |
10 |
atgagattaggatcacaatgttatagttcaaatgaggtgatatttttattcaactactcaattacaacatggtggaatgcaattggtcacgtcttatgct |
109 |
Q |
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| T |
6356168 |
atgagattaggatcacaatgttatagttcaaatgaggtgatatttttattcaactactcatttacaacatggtggaatgcaattggtcacgtcttatgct |
6356267 |
T |
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| Q |
110 |
aattttttattatgagtgattttctcgtggtatataaaataataatatatccgattgcaaaattatttgggtagttgttatatgtgccagccttggcatt |
209 |
Q |
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| T |
6356268 |
aattttttattatgagtgattatctcgtggtatataaaataataatatatccgattgcaaaattattttggtagttgttatatgtgccagccttggcatt |
6356367 |
T |
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| Q |
210 |
atgttcaataataatgactctgtttgctctattgttaattattactactatcttacgtgtatgcattggttttctcgagttttctcatattttttaaagt |
309 |
Q |
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| T |
6356368 |
atgttcaataataatgactctgtttgctctattgttaattattactactatcttacgtgtctgcattggttttctcgagttttctcatattttttaaagt |
6356467 |
T |
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| Q |
310 |
gggaaaatctctacccttaaaattcatttctttcttattttaatttcaaaatctctcc |
367 |
Q |
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| T |
6356468 |
gggaaaatctctacccttaaaattcatttctttcttattttaatttcaaaatctctcc |
6356525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 388 - 431
Target Start/End: Original strand, 6356566 - 6356609
Alignment:
| Q |
388 |
ctctcttactatcaaatcaagattaggattggacttgagataca |
431 |
Q |
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| T |
6356566 |
ctctcatactatcaaatcaagattaggattggacttgagataca |
6356609 |
T |
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