View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11842_low_2 (Length: 285)
Name: NF11842_low_2
Description: NF11842
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11842_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 245; Significance: 1e-136; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 1 - 253
Target Start/End: Original strand, 39954016 - 39954268
Alignment:
| Q |
1 |
aaagttgactgatgttgattttgcttctttataaaggcagtgcatgattattgaggtttagataattgatgacacaaaactttctacctgtagcatcagg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39954016 |
aaagttgactgatgttgattttgcttctttataaaggcagtgcatgattattgaggtttagataattgatgacacaaaactttctacctgtagcatcagg |
39954115 |
T |
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| Q |
101 |
gaaaatttacataaaagcatagcaagtattttaacttttgcattatagtggaaaatttacagaaaagcattgcaagtattctatctattttgttataatc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39954116 |
gaaaatttacataaaagcatagcaagtattttaacttttgcattatagtggaaaatttacagaaaagcattgcaagtattctatctattttgttataatc |
39954215 |
T |
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| Q |
201 |
atcaaaactttaatggaaggttaatgagattttatagctggtctgctcggttg |
253 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||| |||| |
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| T |
39954216 |
atcaaaacttgaatggaaggttaatgagattttatagctggtctgctccgttg |
39954268 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 210 - 253
Target Start/End: Complemental strand, 1685651 - 1685608
Alignment:
| Q |
210 |
ttaatggaaggttaatgagattttatagctggtctgctcggttg |
253 |
Q |
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| T |
1685651 |
ttaatggaaggttaatgagattttgtagctggtctgctcggttg |
1685608 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 181 - 218
Target Start/End: Original strand, 39953963 - 39954000
Alignment:
| Q |
181 |
ctatctattttgttataatcatcaaaactttaatggaa |
218 |
Q |
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| T |
39953963 |
ctatctatttggttataattatcaaaactttaatggaa |
39954000 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 71; Significance: 3e-32; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 92
Target Start/End: Original strand, 32709560 - 32709653
Alignment:
| Q |
1 |
aaagttgactgatgttgattttgcttctttataaaggcagtgcatgattattgaggtttagataat--tgatgacacaaaactttctacctgta |
92 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||| |||| ||||||| |
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| T |
32709560 |
aaagttgactgatgttgattttgcttctttataaaggcagtgcatgattattgaggttcagataattgtgatgacacaaaaatttcaacctgta |
32709653 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 210 - 253
Target Start/End: Original strand, 44800105 - 44800148
Alignment:
| Q |
210 |
ttaatggaaggttaatgagattttatagctggtctgctcggttg |
253 |
Q |
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| T |
44800105 |
ttaatggaagattaatgagattttgtagttggtctgctcggttg |
44800148 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 210 - 253
Target Start/End: Complemental strand, 37478400 - 37478357
Alignment:
| Q |
210 |
ttaatggaaggttaatgagattttatagctggtctgctcggttg |
253 |
Q |
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| T |
37478400 |
ttaatggaaggttaatgagattttgtagctggtctgctcggttg |
37478357 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 210 - 253
Target Start/End: Complemental strand, 21887071 - 21887028
Alignment:
| Q |
210 |
ttaatggaaggttaatgagattttatagctggtctgctcggttg |
253 |
Q |
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|||||||||||||||||||||||| ||||||||||||| ||||| |
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| T |
21887071 |
ttaatggaaggttaatgagattttgtagctggtctgcttggttg |
21887028 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 210 - 253
Target Start/End: Complemental strand, 52037992 - 52037949
Alignment:
| Q |
210 |
ttaatggaaggttaatgagattttatagctggtctgctcggttg |
253 |
Q |
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| T |
52037992 |
ttaatggaaggttaatgagattttgtagctggtctgctcggttg |
52037949 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 210 - 253
Target Start/End: Original strand, 41053248 - 41053291
Alignment:
| Q |
210 |
ttaatggaaggttaatgagattttatagctggtctgctcggttg |
253 |
Q |
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|||||||||| ||||||||||||| ||||||||||||||||||| |
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| T |
41053248 |
ttaatggaagtttaatgagattttgtagctggtctgctcggttg |
41053291 |
T |
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