View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11842_low_3 (Length: 241)
Name: NF11842_low_3
Description: NF11842
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11842_low_3 |
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| [»] chr5 (2 HSPs) |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 18 - 241
Target Start/End: Original strand, 39953593 - 39953817
Alignment:
| Q |
18 |
ctaattagtgtctaacacgtgttcattattccaatttattggagagcttgccctttttagtaattaaactttgtaatacgtcgaactgatttttccttat |
117 |
Q |
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| T |
39953593 |
ctaattagtgtctaacacgtgttcattattccaatttattggagagcttcccctttttagtaattaaacttcgtaatacgtagaactgatttttccttat |
39953692 |
T |
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| Q |
118 |
tgaaattaactacttaattatccattggatttgaatttttagatat-aaaaaagaactgtggatggaattataccggaagaagcatatgaattgagaaga |
216 |
Q |
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| T |
39953693 |
tgaaattaactacttaattatccattggatttgaatttttagatataaaaaaagaactgtggatggaactatactggaagaagcatatgaattgagaaga |
39953792 |
T |
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| Q |
217 |
aagtttgcactcactcatcacaggt |
241 |
Q |
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| T |
39953793 |
aagtttgcactcactcatcacaggt |
39953817 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 18 - 156
Target Start/End: Original strand, 33039800 - 33039939
Alignment:
| Q |
18 |
ctaattagtgtctaacacgtgttcattattccaatttattggagagcttgcccttttta-gtaattaaactttgtaatacgtcgaactgatttttcctta |
116 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||| ||||||||||||||||||||| |||||||||||||| || |
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| T |
33039800 |
ctaattagtgtctaacacgtgttcatgattccaatttattggagagcttcccctttttaagtaattaaactttgtaatacgcagaactgatttttccata |
33039899 |
T |
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| Q |
117 |
ttgaaattaactacttaattatccattggatttgaatttt |
156 |
Q |
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| T |
33039900 |
ttgaaattaaccacttaattatccattgattttgaatttt |
33039939 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 174 - 241
Target Start/End: Complemental strand, 21989487 - 21989420
Alignment:
| Q |
174 |
tgtggatggaattataccggaagaagcatatgaattgagaagaaagtttgcactcactcatcacaggt |
241 |
Q |
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| T |
21989487 |
tgtggatggaactatacttgaagaagcatataaattgagacgaaagtttgcactcactcatcacaggt |
21989420 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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