View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11843_high_4 (Length: 317)
Name: NF11843_high_4
Description: NF11843
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11843_high_4 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 301
Target Start/End: Original strand, 24377965 - 24378265
Alignment:
| Q |
1 |
actttccacccccaaatttcttctttttcaacaaacaaaattccaaatttgtatccaaatccatcaaaacaaattcatacatgaagaaaaaacgaatgtc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | |||| |
|
|
| T |
24377965 |
actttccacccccaaatttcttctttttcaacaaacaaaattccaaatttgtatccaaatccatcaacacaaattcatacatgaagaaaaaaagggtgtc |
24378064 |
T |
|
| Q |
101 |
acaaatccaacacatattcatacatgaacaaacccagaaatttaaccctaaatccaacaattaaaatactctctcgttctcctcgattccaaatctgtgt |
200 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||| || |
|
|
| T |
24378065 |
gcaaatccaacacagattcatacatgaacaaacccagaaatttaaccccaaatccaacaattaaaatactctctcgttctccttgattccaaatctgcgt |
24378164 |
T |
|
| Q |
201 |
ggtagcagcggtggtgctagcggtgttgttacggtggtgccggagaagtttccgacgtatagagaagaaggaagagatttttgattgttgttgcttccat |
300 |
Q |
| |
|
||| |||||||||||||||||||||||||||| ||||||||||||||||||||| |||| ||||||||||||| ||||||| |||||| ||||||||||| |
|
|
| T |
24378165 |
ggtggcagcggtggtgctagcggtgttgttacagtggtgccggagaagtttccggcgtagagagaagaaggaaaagattttcgattgtcgttgcttccat |
24378264 |
T |
|
| Q |
301 |
t |
301 |
Q |
| |
|
| |
|
|
| T |
24378265 |
t |
24378265 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 173; Significance: 5e-93; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 173; E-Value: 5e-93
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 20102867 - 20102651
Alignment:
| Q |
1 |
actttccacccccaaatttcttctttttcaacaaacaaaattccaaatttgtatccaaatccatcaaaacaaattcatacatgaagaaaaaacgaatgtc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | |||| |
|
|
| T |
20102867 |
actttccacccccaaatttcttctttttcaacaaacaaaattccaaatttgtatccaaatccatcaacacaaattcatacatgaagaaaaaaagggtgtc |
20102768 |
T |
|
| Q |
101 |
acaaatccaacacatattcatacatgaacaaacccagaaatttaaccctaaatccaacaattaaaatactctctcgttctcctcgattccaaatctgtgt |
200 |
Q |
| |
|
||||| ||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||| | |
|
|
| T |
20102767 |
gcaaatacaacacagattcatacatgaacaaacccagaaatttaaccccaaatccaacaattaaaatactctctcgttctccttgattccaaatctgcga |
20102668 |
T |
|
| Q |
201 |
ggtagcagcggtggtgc |
217 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
20102667 |
ggtagcagcggtggtgc |
20102651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 232 - 301
Target Start/End: Complemental strand, 20102659 - 20102590
Alignment:
| Q |
232 |
cggtggtgccggagaagtttccgacgtatagagaagaaggaagagatttttgattgttgttgcttccatt |
301 |
Q |
| |
|
||||||||||||||||||||||| |||| ||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
20102659 |
cggtggtgccggagaagtttccggcgtagagagaagaaggaagagatttttgattgatgttgcttccatt |
20102590 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University