View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11843_low_1 (Length: 842)
Name: NF11843_low_1
Description: NF11843
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11843_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 473; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 473; E-Value: 0
Query Start/End: Original strand, 20 - 500
Target Start/End: Complemental strand, 25032368 - 25031889
Alignment:
| Q |
20 |
tttttatgctaaaaagtgttgatcgaacttttaatctccttatcactccactcattaattaacttcttcactttagccatcaaggtatccttgtattatg |
119 |
Q |
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| T |
25032368 |
tttttatgctaaaa-gtgttgatcgaacttttaatctccttatcactccactcattaattaacttcttcactttagccatcaaggtatccttgtattatg |
25032270 |
T |
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| Q |
120 |
acattgtttaaactgatttatactacactatcagtgtatgcacattaaatttcaaacaatatattatattgttgaatgtgacatgtgtcttgtataagca |
219 |
Q |
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| T |
25032269 |
acattgtttaaactgatttatactacactatcagtgtatgcacattaaatttcaaacaatatattatattgttgaatgtgacatgtgtcttgtataagca |
25032170 |
T |
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| Q |
220 |
aaaacaagttacttgcatagattggcaaagggtgacataaatatcatgttgggatgaagttatatttgaagggaaagtaggaagcttcctagaagctgtg |
319 |
Q |
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| T |
25032169 |
aaaacaagttacttgcatagattggcaaagggtgacataaatatcatgttgggatgaagttatatttgaagggaaagtaggaagcttcctagaagctgtg |
25032070 |
T |
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| Q |
320 |
tattaactaataagaaaacaaatgcattatgcatgtggggttaatgcaaacaatacatggtggctattgggtatgttgaagggtgaagaggagaggtaga |
419 |
Q |
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| T |
25032069 |
tattaactaataagaaaacaaatgcattatgcatgtggggttaatgcaaacaatacatggtggctattgggtatgttgaagggtgaagaggagaggtaga |
25031970 |
T |
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| Q |
420 |
tttaccagagagggatgggactggaaccaatcagtacgtatttttggagggaagtgataatgtgataaccatgccaacata |
500 |
Q |
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| T |
25031969 |
tttaccagagagggatgggactggaaccaatcagtacgtatttttggagggaagtgataatgtgataaccatgccaacata |
25031889 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 492 - 827
Target Start/End: Complemental strand, 25027357 - 25027024
Alignment:
| Q |
492 |
gccaacatattgagagttttgaacattttgggaattctgaattctcacttctcattcattttgaacaaaacaaagagtgaatcagcttgttgctacttca |
591 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
25027357 |
gccaacatattgagagttttgaacattttgggaattctgaattctcacttctcattcattttgaacaaaacaaag-gtgaatcagcttgttgctacttca |
25027259 |
T |
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| Q |
592 |
accatgtgatccctataggtgatgagtaattatatgacagttagacttatgcatatgacaaaactaataatgaatatatggttataatagagtatattgt |
691 |
Q |
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| T |
25027258 |
accatgtgatccctataggtgatgag-acctatatgacagttagacttatgcatgtgacaaaagtaataatgaatatatggttataatagagtatattgt |
25027160 |
T |
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| Q |
692 |
gaaatattctacaatcttgtgggatatggaaatggtcccacaatttcttggggagtaaaatgtagttttagttttcatttgaattcctaaatatttggtg |
791 |
Q |
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| T |
25027159 |
gaaatattctacaatcttgtgggatatggaaatggtcccacaatttcttggggagtaaaatgtagttttagttttcatttgaattcctaaatatttggtg |
25027060 |
T |
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| Q |
792 |
tattttgaataggtagtcagagtcactcttggatgt |
827 |
Q |
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| T |
25027059 |
tattttgaataggtagtcagagtcactcttggatgt |
25027024 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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