View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11843_low_12 (Length: 234)
Name: NF11843_low_12
Description: NF11843
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11843_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 11 - 218
Target Start/End: Complemental strand, 51122243 - 51122035
Alignment:
| Q |
11 |
aagcagagacaagacatacatttttataagggaaaaaaggattatttcccttaggatgtagaggaaatatcatccaaatatgcaataaattgagacaatc |
110 |
Q |
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| T |
51122243 |
aagcaaagacaaggcatacatttttataagggaaaaaaggattatttcccttaggatgtggaggaaatatcatccaaatatgcaataaattgagacaatc |
51122144 |
T |
|
| Q |
111 |
aattattttt-atccattagccaaaatcatgtgacaaaaagctgcagcttcctagacaataaagtatataaaattaaatactgagaaagcaacacaggca |
209 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
51122143 |
aattattttttatccattagccaaaatcatgtgacaaaaagctgcagcttcctagacaataaagtatataaaattaaatactgagaaagcaacacaagca |
51122044 |
T |
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| Q |
210 |
ccatatact |
218 |
Q |
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||||||||| |
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| T |
51122043 |
ccatatact |
51122035 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 125; Significance: 2e-64; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 66 - 213
Target Start/End: Original strand, 39016527 - 39016675
Alignment:
| Q |
66 |
atgtagaggaaatatcatccaaatatgcaataaattgagacaatcaattatttt-tatccattagccaaaatcatgtgacaaaaagctgcagcttcctag |
164 |
Q |
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|||| ||||||| |||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
39016527 |
atgtggaggaaagatcatccaaatatgcaatgaattgagacaatcaattattttttatccattagccaaaatcatgtgacaaaaaactgcagcttcctag |
39016626 |
T |
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| Q |
165 |
acaataaagtatataaaattaaatactgagaaagcaacacaggcaccat |
213 |
Q |
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| T |
39016627 |
acaataaagtatataaaattaaatactgagaaagcaacacaggcaccat |
39016675 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 11 - 58
Target Start/End: Original strand, 39016431 - 39016478
Alignment:
| Q |
11 |
aagcagagacaagacatacatttttataagggaaaaaaggattatttc |
58 |
Q |
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||||| ||||||| |||||||||||||||||||||||||||||||||| |
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| T |
39016431 |
aagcaaagacaaggcatacatttttataagggaaaaaaggattatttc |
39016478 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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