View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11843_low_4 (Length: 317)
Name: NF11843_low_4
Description: NF11843
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11843_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 301
Target Start/End: Original strand, 24377965 - 24378265
Alignment:
| Q |
1 |
actttccacccccaaatttcttctttttcaacaaacaaaattccaaatttgtatccaaatccatcaaaacaaattcatacatgaagaaaaaacgaatgtc |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | |||| |
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| T |
24377965 |
actttccacccccaaatttcttctttttcaacaaacaaaattccaaatttgtatccaaatccatcaacacaaattcatacatgaagaaaaaaagggtgtc |
24378064 |
T |
|
| Q |
101 |
acaaatccaacacatattcatacatgaacaaacccagaaatttaaccctaaatccaacaattaaaatactctctcgttctcctcgattccaaatctgtgt |
200 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||| || |
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| T |
24378065 |
gcaaatccaacacagattcatacatgaacaaacccagaaatttaaccccaaatccaacaattaaaatactctctcgttctccttgattccaaatctgcgt |
24378164 |
T |
|
| Q |
201 |
ggtagcagcggtggtgctagcggtgttgttacggtggtgccggagaagtttccgacgtatagagaagaaggaagagatttttgattgttgttgcttccat |
300 |
Q |
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||| |||||||||||||||||||||||||||| ||||||||||||||||||||| |||| ||||||||||||| ||||||| |||||| ||||||||||| |
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| T |
24378165 |
ggtggcagcggtggtgctagcggtgttgttacagtggtgccggagaagtttccggcgtagagagaagaaggaaaagattttcgattgtcgttgcttccat |
24378264 |
T |
|
| Q |
301 |
t |
301 |
Q |
| |
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| |
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| T |
24378265 |
t |
24378265 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 173; Significance: 5e-93; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 173; E-Value: 5e-93
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 20102867 - 20102651
Alignment:
| Q |
1 |
actttccacccccaaatttcttctttttcaacaaacaaaattccaaatttgtatccaaatccatcaaaacaaattcatacatgaagaaaaaacgaatgtc |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | |||| |
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| T |
20102867 |
actttccacccccaaatttcttctttttcaacaaacaaaattccaaatttgtatccaaatccatcaacacaaattcatacatgaagaaaaaaagggtgtc |
20102768 |
T |
|
| Q |
101 |
acaaatccaacacatattcatacatgaacaaacccagaaatttaaccctaaatccaacaattaaaatactctctcgttctcctcgattccaaatctgtgt |
200 |
Q |
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| T |
20102767 |
gcaaatacaacacagattcatacatgaacaaacccagaaatttaaccccaaatccaacaattaaaatactctctcgttctccttgattccaaatctgcga |
20102668 |
T |
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| Q |
201 |
ggtagcagcggtggtgc |
217 |
Q |
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||||||||||||||||| |
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| T |
20102667 |
ggtagcagcggtggtgc |
20102651 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 232 - 301
Target Start/End: Complemental strand, 20102659 - 20102590
Alignment:
| Q |
232 |
cggtggtgccggagaagtttccgacgtatagagaagaaggaagagatttttgattgttgttgcttccatt |
301 |
Q |
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||||||||||||||||||||||| |||| ||||||||||||||||||||||||||| ||||||||||||| |
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| T |
20102659 |
cggtggtgccggagaagtttccggcgtagagagaagaaggaagagatttttgattgatgttgcttccatt |
20102590 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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