View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11843_low_7 (Length: 246)
Name: NF11843_low_7
Description: NF11843
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11843_low_7 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 167; Significance: 1e-89; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 1 - 171
Target Start/End: Complemental strand, 27214770 - 27214600
Alignment:
| Q |
1 |
cccgactatgccatcaccttctgtccatcagcttgaactccatgaccaaacaaatatgccattttaaattattgaacttatgtctttatataaaataaga |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
27214770 |
cccgactatgccatcaccttctgtccatcagcttgaactccatgaccaaacaaatatgccattttaaatcattgaacttatgtctttatataaaataaga |
27214671 |
T |
|
| Q |
101 |
gcacatatataaatgtgcacatatacacacaaacttgtggtatagtataaatcaaaacatagcgtgctttc |
171 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27214670 |
gcacatatataaatgtgcacatatacacacaaacttgtggtatagtataaatcaaaacatagcgtgctttc |
27214600 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 1 - 151
Target Start/End: Complemental strand, 27220732 - 27220582
Alignment:
| Q |
1 |
cccgactatgccatcaccttctgtccatcagcttgaactccatgaccaaacaaatatgccattttaaattattgaacttatgtctttatataaaataaga |
100 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27220732 |
cccgactacgccatcaccttctgtccatcagcttgaactccatgaccaaacaaatatgccattttaaattattgaacttatgtctttatataaaataaga |
27220633 |
T |
|
| Q |
101 |
gcacatatataaatgtgcacatatacacacaaacttgtggtatagtataaa |
151 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27220632 |
gcacatatataaatgtgcacatatacacacaaacttgtggtatagtataaa |
27220582 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 1 - 148
Target Start/End: Complemental strand, 27207399 - 27207253
Alignment:
| Q |
1 |
cccgactatgccatcaccttctgtccatcagcttgaactccatgaccaaacaaatatgccattttaaattattgaacttatgtctttatataaaataaga |
100 |
Q |
| |
|
||||||||||| ||||||||||| ||||||||||||||||| |||||||||||||| ||||||||||||||| ||||||||||||| | ||||||||| |
|
|
| T |
27207399 |
cccgactatgcaatcaccttctgcccatcagcttgaactcctcgaccaaacaaatataccattttaaattatttaacttatgtctttgtctaaaataagt |
27207300 |
T |
|
| Q |
101 |
gcacatatataaatgtgcacatatacacacaaacttgtggtatagtat |
148 |
Q |
| |
|
|||||| | |||||||||||||| ||||| | |||||||||||| |
|
|
| T |
27207299 |
gcacatgt-gcaatgtgcacatatatacacacaaacgtggtatagtat |
27207253 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 27444131 - 27444184
Alignment:
| Q |
1 |
cccgactatgccatcaccttctgtccatcagcttgaactccatgaccaaacaaa |
54 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27444131 |
cccgactatgccatcaccttctgtccatcagcttgaactccatgaccaaacaaa |
27444184 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 198 - 240
Target Start/End: Complemental strand, 27214573 - 27214531
Alignment:
| Q |
198 |
gataaattattaaattcatgaagttattatttgggttcatctc |
240 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
27214573 |
gataaattattaaattcatgaagttattatttgggttcttctc |
27214531 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 198 - 240
Target Start/End: Complemental strand, 27220522 - 27220480
Alignment:
| Q |
198 |
gataaattattaaattcatgaagttattatttgggttcatctc |
240 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
27220522 |
gataaattattaaattcatgaagttattatttgggttcttctc |
27220480 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University