View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11844_high_1 (Length: 220)
Name: NF11844_high_1
Description: NF11844
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11844_high_1 |
 | |
|
| [»] chr6 (4 HSPs) |
| |
|
| [»] chr1 (2 HSPs) |
| |
|
Alignment Details
Target: chr6 (Bit Score: 128; Significance: 2e-66; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 128; E-Value: 2e-66
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 32600864 - 32601095
Alignment:
| Q |
1 |
atctattatagaagtcatgcta-gggatggaataaagttagttggtcataatataagaaaatgaagaaaataattgannnnnnnnactattccagttata |
99 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
32600864 |
atctattatagaagtcatgctaagggatggaataaagttagttggtcataatataagaaaatgaagaaaataattgattttttttactattccagttata |
32600963 |
T |
|
| Q |
100 |
atattaagtttactcgaagaaaatgnnnnnnnnnnt-----------gaagaaaataagtgagttatcatattaattttacctattccagttatcttcaa |
188 |
Q |
| |
|
||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32600964 |
atattaagtttactcgaagaaaatgaaaaaaaaaatatgaagaaaatgaagaaaataagtgagttatcatattaattttacctattccagttatcttcaa |
32601063 |
T |
|
| Q |
189 |
tatctccagttgttctccaactatttcccaca |
220 |
Q |
| |
|
||||||| |||||||||||||||||||||||| |
|
|
| T |
32601064 |
tatctcctgttgttctccaactatttcccaca |
32601095 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 32590416 - 32590489
Alignment:
| Q |
1 |
atctattatagaagtcatgctagggatggaataaagttagttggtcataatataagaaaatgaagaaaataattg |
75 |
Q |
| |
|
|||||||||||||||||| ||||||| ||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
32590416 |
atctattatagaagtcatcctaggga-ggaataaagttagttggtcataatataggaaaatgaagaaaataattg |
32590489 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 147 - 220
Target Start/End: Original strand, 32590551 - 32590624
Alignment:
| Q |
147 |
gtgagttatcatattaattttacctattccagttatcttcaatatctccagttgttctccaactatttcccaca |
220 |
Q |
| |
|
|||| |||||||||||||||||||||| ||| ||||||| ||||||||| |||||||||||||||||||||||| |
|
|
| T |
32590551 |
gtgaattatcatattaattttacctatgccaattatctttaatatctcctgttgttctccaactatttcccaca |
32590624 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 168 - 220
Target Start/End: Complemental strand, 24883434 - 24883382
Alignment:
| Q |
168 |
acctattccagttatcttcaatatctccagttgttctccaactatttcccaca |
220 |
Q |
| |
|
|||||| ||| |||||||| |||||| |||||||||||||||||||||||| |
|
|
| T |
24883434 |
acctatcccatttatcttcgatatctgatgttgttctccaactatttcccaca |
24883382 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 166 - 220
Target Start/End: Original strand, 34594089 - 34594143
Alignment:
| Q |
166 |
ttacctattccagttatcttcaatatctccagttgttctccaactatttcccaca |
220 |
Q |
| |
|
|||||||||||| |||||||||||||| || |||||||||||||||||||||||| |
|
|
| T |
34594089 |
ttacctattccaattatcttcaatatcacctgttgttctccaactatttcccaca |
34594143 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 168 - 220
Target Start/End: Original strand, 34578391 - 34578443
Alignment:
| Q |
168 |
acctattccagttatcttcaatatctccagttgttctccaactatttcccaca |
220 |
Q |
| |
|
|||| ||||| |||||||| ||||| || || ||||||||||||||||||||| |
|
|
| T |
34578391 |
acctcttccaattatcttctatatcacccgtggttctccaactatttcccaca |
34578443 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University