View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11844_high_4 (Length: 325)

Name: NF11844_high_4
Description: NF11844
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11844_high_4
NF11844_high_4
[»] chr5 (32 HSPs)
chr5 (14-325)||(38816628-38816932)
chr5 (35-164)||(22423764-22423895)
chr5 (115-190)||(19820428-19820503)
chr5 (123-190)||(22013364-22013431)
chr5 (116-190)||(42469171-42469245)
chr5 (116-165)||(15410483-15410532)
chr5 (116-168)||(6326332-6326384)
chr5 (67-151)||(3966492-3966577)
chr5 (124-175)||(21522715-21522766)
chr5 (124-175)||(21533281-21533332)
chr5 (118-151)||(6035472-6035505)
chr5 (33-82)||(8420075-8420124)
chr5 (115-168)||(21191090-21191143)
chr5 (35-87)||(9929668-9929720)
chr5 (115-151)||(17123037-17123073)
chr5 (115-151)||(27144452-27144488)
chr5 (67-151)||(11685928-11686012)
chr5 (115-158)||(14674251-14674294)
chr5 (117-168)||(15382449-15382500)
chr5 (115-158)||(19579683-19579726)
chr5 (115-158)||(34879332-34879375)
chr5 (116-158)||(5873548-5873590)
chr5 (33-63)||(24906250-24906280)
chr5 (116-146)||(27932229-27932259)
chr5 (115-149)||(28588708-28588742)
chr5 (122-168)||(36642803-36642849)
chr5 (115-164)||(19552577-19552626)
chr5 (113-142)||(32766975-32767004)
chr5 (123-151)||(2436911-2436939)
chr5 (116-168)||(21137661-21137713)
chr5 (115-151)||(31084312-31084348)
chr5 (67-151)||(41995460-41995543)
[»] chr6 (41 HSPs)
chr6 (67-168)||(10294079-10294181)
chr6 (115-175)||(9027143-9027203)
chr6 (67-168)||(16766669-16766771)
chr6 (115-190)||(853893-853968)
chr6 (35-166)||(5732474-5732595)
chr6 (35-165)||(8805524-8805656)
chr6 (115-166)||(9629357-9629408)
chr6 (115-165)||(9658854-9658904)
chr6 (115-153)||(19040339-19040377)
chr6 (115-168)||(5000660-5000713)
chr6 (122-190)||(8365560-8365628)
chr6 (67-168)||(9107355-9107457)
chr6 (116-188)||(12696277-12696348)
chr6 (116-164)||(13851712-13851760)
chr6 (115-158)||(20371144-20371187)
chr6 (115-190)||(30866178-30866253)
chr6 (116-190)||(6389693-6389767)
chr6 (116-166)||(7977865-7977915)
chr6 (115-168)||(426548-426601)
chr6 (115-156)||(7265627-7265668)
chr6 (115-168)||(7938088-7938141)
chr6 (72-166)||(34073337-34073432)
chr6 (122-190)||(3398569-3398637)
chr6 (115-167)||(8777007-8777059)
chr6 (35-82)||(426478-426525)
chr6 (115-158)||(17841623-17841666)
chr6 (84-167)||(31579229-31579311)
chr6 (33-63)||(34073276-34073306)
chr6 (35-76)||(2117134-2117175)
chr6 (115-148)||(10842524-10842557)
chr6 (71-165)||(26562664-26562759)
chr6 (115-168)||(34595106-34595159)
chr6 (115-151)||(677826-677862)
chr6 (115-151)||(7996412-7996448)
chr6 (115-151)||(8022353-8022389)
chr6 (115-151)||(10339160-10339196)
chr6 (115-167)||(16833281-16833333)
chr6 (115-151)||(17341698-17341734)
chr6 (116-148)||(21395342-21395374)
chr6 (115-151)||(21424836-21424872)
chr6 (67-151)||(34290064-34290147)
[»] chr7 (36 HSPs)
chr7 (116-190)||(27944991-27945065)
chr7 (65-147)||(29787354-29787435)
chr7 (115-168)||(11722132-11722185)
chr7 (84-165)||(19206025-19206107)
chr7 (67-151)||(32308109-32308194)
chr7 (116-190)||(24105629-24105702)
chr7 (35-145)||(11700798-11700909)
chr7 (67-177)||(24339605-24339716)
chr7 (115-166)||(2425767-2425818)
chr7 (115-157)||(8046061-8046103)
chr7 (84-151)||(22484014-22484082)
chr7 (115-157)||(23191879-23191921)
chr7 (115-165)||(26733279-26733329)
chr7 (72-146)||(30731031-30731104)
chr7 (115-164)||(1433430-1433479)
chr7 (75-148)||(11072290-11072362)
chr7 (117-166)||(49107795-49107844)
chr7 (35-195)||(7328639-7328805)
chr7 (115-151)||(20549780-20549816)
chr7 (116-168)||(43249965-43250017)
chr7 (119-190)||(2034392-2034462)
chr7 (115-154)||(2948669-2948708)
chr7 (67-151)||(6630897-6630982)
chr7 (115-158)||(21828439-21828482)
chr7 (116-147)||(28155563-28155594)
chr7 (115-190)||(43027503-43027578)
chr7 (116-166)||(5235960-5236010)
chr7 (67-133)||(9933282-9933347)
chr7 (115-157)||(20545270-20545312)
chr7 (117-166)||(4017830-4017879)
chr7 (34-63)||(17852091-17852120)
chr7 (118-151)||(25791642-25791675)
chr7 (117-166)||(26329418-26329467)
chr7 (115-167)||(11061110-11061162)
chr7 (35-63)||(15680900-15680928)
chr7 (115-151)||(22868031-22868067)
[»] chr8 (19 HSPs)
chr8 (67-168)||(22651948-22652050)
chr8 (67-168)||(29510289-29510391)
chr8 (122-190)||(25192388-25192456)
chr8 (115-168)||(27213519-27213572)
chr8 (115-158)||(31109552-31109595)
chr8 (115-181)||(926822-926888)
chr8 (122-167)||(126390-126435)
chr8 (115-148)||(39954313-39954346)
chr8 (115-155)||(31236611-31236651)
chr8 (82-158)||(37283812-37283887)
chr8 (115-190)||(13436998-13437073)
chr8 (115-177)||(24362236-24362298)
chr8 (115-149)||(27101506-27101540)
chr8 (115-157)||(34897068-34897110)
chr8 (115-148)||(13844630-13844663)
chr8 (115-167)||(4298920-4298972)
chr8 (115-167)||(4673459-4673511)
chr8 (115-167)||(20873042-20873094)
chr8 (67-163)||(29776013-29776108)
[»] chr1 (35 HSPs)
chr1 (115-167)||(6427323-6427375)
chr1 (115-168)||(398799-398852)
chr1 (115-168)||(40917723-40917776)
chr1 (115-167)||(2896155-2896207)
chr1 (116-169)||(5376535-5376588)
chr1 (35-88)||(48547938-48547991)
chr1 (36-182)||(10572535-10572690)
chr1 (115-159)||(12443494-12443538)
chr1 (115-151)||(17831565-17831601)
chr1 (115-151)||(36878450-36878486)
chr1 (76-168)||(1486703-1486796)
chr1 (115-190)||(5927374-5927449)
chr1 (33-136)||(44482234-44482343)
chr1 (90-168)||(1262856-1262933)
chr1 (115-165)||(9709795-9709845)
chr1 (115-165)||(34298411-34298461)
chr1 (75-158)||(38503302-38503386)
chr1 (115-151)||(19562655-19562691)
chr1 (116-151)||(609493-609528)
chr1 (115-158)||(6415035-6415078)
chr1 (115-158)||(46348417-46348460)
chr1 (122-177)||(48040503-48040558)
chr1 (116-167)||(48450622-48450673)
chr1 (117-151)||(3490426-3490460)
chr1 (115-149)||(10475011-10475045)
chr1 (116-190)||(39130802-39130876)
chr1 (113-151)||(40285686-40285724)
chr1 (115-168)||(20157384-20157437)
chr1 (115-148)||(21530681-21530714)
chr1 (67-145)||(25361881-25361960)
chr1 (116-145)||(41877505-41877534)
chr1 (67-148)||(9828036-9828118)
chr1 (115-167)||(15641064-15641116)
chr1 (122-158)||(18556497-18556533)
chr1 (84-148)||(25452152-25452215)
[»] chr2 (31 HSPs)
chr2 (79-190)||(21782817-21782927)
chr2 (126-190)||(33519736-33519800)
chr2 (115-190)||(20539708-20539783)
chr2 (115-165)||(21616737-21616787)
chr2 (84-168)||(4332898-4332981)
chr2 (84-142)||(1327976-1328033)
chr2 (67-165)||(36409614-36409711)
chr2 (117-190)||(19536434-19536507)
chr2 (118-167)||(23717999-23718048)
chr2 (118-167)||(24105671-24105720)
chr2 (35-148)||(19573970-19574078)
chr2 (67-140)||(44860320-44860394)
chr2 (65-153)||(18420417-18420506)
chr2 (35-82)||(19536361-19536408)
chr2 (115-150)||(37411278-37411313)
chr2 (36-82)||(18255945-18255991)
chr2 (90-168)||(18276493-18276570)
chr2 (36-82)||(34691770-34691816)
chr2 (36-82)||(34714182-34714228)
chr2 (116-157)||(21091706-21091747)
chr2 (124-189)||(21624217-21624282)
chr2 (115-168)||(31018562-31018615)
chr2 (115-151)||(896200-896236)
chr2 (70-158)||(2331776-2331863)
chr2 (116-164)||(10535794-10535842)
chr2 (85-165)||(28412325-28412404)
chr2 (115-167)||(30404884-30404936)
chr2 (115-147)||(31284041-31284073)
chr2 (115-151)||(38117193-38117229)
chr2 (35-71)||(42511322-42511358)
chr2 (116-148)||(42832311-42832343)
[»] scaffold0306 (1 HSPs)
scaffold0306 (115-191)||(13349-13425)
[»] scaffold0223 (1 HSPs)
scaffold0223 (35-190)||(20122-20279)
[»] scaffold0152 (1 HSPs)
scaffold0152 (115-191)||(21902-21978)
[»] chr3 (36 HSPs)
chr3 (65-154)||(8039818-8039908)
chr3 (78-169)||(5441029-5441119)
chr3 (115-166)||(8383231-8383282)
chr3 (94-159)||(5407261-5407325)
chr3 (116-168)||(24205076-24205128)
chr3 (124-190)||(8842280-8842346)
chr3 (116-166)||(9800014-9800064)
chr3 (67-168)||(25064881-25064981)
chr3 (115-168)||(28917973-28918026)
chr3 (115-167)||(2620087-2620139)
chr3 (116-164)||(4991002-4991050)
chr3 (115-167)||(26492239-26492291)
chr3 (122-181)||(10335327-10335386)
chr3 (119-158)||(21720746-21720785)
chr3 (115-190)||(55401025-55401100)
chr3 (33-71)||(4466538-4466576)
chr3 (33-63)||(5440965-5440995)
chr3 (115-189)||(8587055-8587129)
chr3 (115-165)||(12674535-12674585)
chr3 (33-71)||(13807237-13807275)
chr3 (115-189)||(32429414-32429488)
chr3 (117-158)||(3865592-3865633)
chr3 (117-158)||(12703989-12704030)
chr3 (115-168)||(15796328-15796381)
chr3 (94-147)||(34307794-34307846)
chr3 (125-189)||(3631644-3631708)
chr3 (115-151)||(4987325-4987361)
chr3 (115-151)||(6525714-6525750)
chr3 (122-158)||(10318075-10318111)
chr3 (115-159)||(14832080-14832124)
chr3 (115-151)||(21479107-21479143)
chr3 (116-148)||(25074781-25074813)
chr3 (115-151)||(26290360-26290396)
chr3 (115-167)||(26508083-26508135)
chr3 (35-71)||(27505334-27505370)
chr3 (115-151)||(40052321-40052357)
[»] scaffold0168 (3 HSPs)
scaffold0168 (35-165)||(21018-21149)
scaffold0168 (35-96)||(21217-21278)
scaffold0168 (35-96)||(21346-21407)
[»] scaffold0053 (1 HSPs)
scaffold0053 (115-168)||(8770-8823)
[»] scaffold0004 (1 HSPs)
scaffold0004 (116-157)||(92790-92831)
[»] scaffold0044 (1 HSPs)
scaffold0044 (65-150)||(53170-53256)
[»] scaffold0007 (1 HSPs)
scaffold0007 (116-168)||(225303-225355)
[»] scaffold0003 (1 HSPs)
scaffold0003 (67-168)||(241566-241668)
[»] chr4 (17 HSPs)
chr4 (116-151)||(35723420-35723455)
chr4 (117-151)||(17345451-17345485)
chr4 (115-168)||(23293020-23293073)
chr4 (115-168)||(36635296-36635349)
chr4 (116-168)||(847923-847975)
chr4 (116-158)||(7012048-7012090)
chr4 (115-165)||(20521883-20521933)
chr4 (35-158)||(30298928-30299048)
chr4 (35-158)||(30327796-30327916)
chr4 (67-138)||(30982863-30982935)
chr4 (115-149)||(40613441-40613475)
chr4 (115-147)||(1747205-1747237)
chr4 (115-158)||(16184801-16184842)
chr4 (35-79)||(18844423-18844467)
chr4 (117-157)||(20633468-20633508)
chr4 (116-168)||(24343479-24343531)
chr4 (35-71)||(28470448-28470484)
[»] scaffold0018 (2 HSPs)
scaffold0018 (115-168)||(178853-178906)
scaffold0018 (116-157)||(192284-192325)
[»] scaffold0103 (1 HSPs)
scaffold0103 (115-158)||(51793-51836)
[»] scaffold0697 (1 HSPs)
scaffold0697 (115-148)||(1636-1669)
[»] scaffold0652 (1 HSPs)
scaffold0652 (115-164)||(496-545)
[»] scaffold0279 (1 HSPs)
scaffold0279 (114-147)||(17903-17936)
[»] scaffold0110 (1 HSPs)
scaffold0110 (78-160)||(28830-28913)
[»] scaffold0475 (1 HSPs)
scaffold0475 (116-168)||(3288-3340)
[»] scaffold0450 (1 HSPs)
scaffold0450 (35-63)||(8564-8592)
[»] scaffold0027 (2 HSPs)
scaffold0027 (115-167)||(46655-46707)
scaffold0027 (33-81)||(46731-46778)


Alignment Details
Target: chr5 (Bit Score: 266; Significance: 1e-148; HSPs: 32)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 14 - 325
Target Start/End: Original strand, 38816628 - 38816932
Alignment:
Q  14 tatcacgattcacgaatataactatgaagcacggacactcctcgaattagccatgtccgacaccgacaccacaccgacacataattataatgaaatatag 113  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  38816628 tatcacgattcacgaatataactatgaatcacggacactcctcgaattagccatgtccgacaccgacaccacaccgacacataattatactgaaatatag 38816727  T
Q  114 cgattttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagaccgtattcgtgcttcatagtatatggttaccgttcaattatt 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||       |||| ||||||| ||||||||||||||||||||||||||||||||||    
T  38816728 cgattttctcaaattattagcggtgtcggcgtgtcagtatccgtgc-------ggagtccgtattagtgcttcatagtatatggttaccgttcaattatt 38816820  T
Q  214 ctattttctcaaattattgcttcaattcaagcaatgatacaaacaatataccatattacattaattgaattgtaaaacccaactatttttaacctgcagc 313  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38816821 ctattttctcaaattattgcttcaattcaaacaatgatacaaacaatataccatattacattaattgaattgtaaaacccaactatttttaacctgcagc 38816920  T
Q  314 gactctctgttg 325  Q
    ||||||||||||    
T  38816921 gactctctgttg 38816932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 35 - 164
Target Start/End: Original strand, 22423764 - 22423895
Alignment:
Q  35 ctatgaagcacggacactcctcgaattagccatgtcc-gacaccgacaccacaccgacacata--attataatgaaatatagcgattttctcaaattatt 131  Q
    ||||||||||||||||||||||| ||||| | ||||| ||||||||||| ||||||||| |||  |||||| |||| ||| | |||||||||||||||||    
T  22423764 ctatgaagcacggacactcctcggattaggcgtgtccagacaccgacacgacaccgacatatataattatattgaattat-gtgattttctcaaattatt 22423862  T
Q  132 agcggtgtcggcgtgtcagtatccgtgccgtgt 164  Q
    ||  ||||| | ||||||||||||||| |||||    
T  22423863 agtagtgtcagggtgtcagtatccgtgtcgtgt 22423895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 115 - 190
Target Start/End: Original strand, 19820428 - 19820503
Alignment:
Q  115 gattttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagaccgtattcgtgcttcatag 190  Q
    |||||||||||||||||||||||||||| |||||||| |||||| ||||||||| | |||||| ||||||||||||    
T  19820428 gattttctcaaattattagcggtgtcggagtgtcagtgtccgtgtcgtgtccggtgtccgtatccgtgcttcatag 19820503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 123 - 190
Target Start/End: Complemental strand, 22013431 - 22013364
Alignment:
Q  123 caaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagaccgtattcgtgcttcatag 190  Q
    |||||||||||| |||||||||||||||| |||||| ||||||||| | |||||| ||||||||||||    
T  22013431 caaattattagctgtgtcggcgtgtcagtgtccgtgtcgtgtccggtgtccgtatccgtgcttcatag 22013364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 116 - 190
Target Start/End: Complemental strand, 42469245 - 42469171
Alignment:
Q  116 attttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagaccgtattcgtgcttcatag 190  Q
    ||||||||||||||||| | |||||||||||||| |||||||| ||||| ||| | |||| | ||||||||||||    
T  42469245 attttctcaaattattatccgtgtcggcgtgtcattatccgtgtcgtgttcggtgtccgtgtccgtgcttcatag 42469171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 116 - 165
Target Start/End: Original strand, 15410483 - 15410532
Alignment:
Q  116 attttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtc 165  Q
    ||||||| |||||||||||||||||||||||||||| |||||| ||||||    
T  15410483 attttcttaaattattagcggtgtcggcgtgtcagtgtccgtgtcgtgtc 15410532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 116 - 168
Target Start/End: Original strand, 6326332 - 6326384
Alignment:
Q  116 attttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccgg 168  Q
    |||||||||||||| ||||| ||||||||||||||| |||||| |||||||||    
T  6326332 attttctcaaattactagcgatgtcggcgtgtcagtgtccgtgtcgtgtccgg 6326384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 67 - 151
Target Start/End: Complemental strand, 3966577 - 3966492
Alignment:
Q  67 tgtccgacaccgacaccacaccgacacata--attataatgaaatatagcgattttctcaaattattagcggtgtcggcgtgtcagt 151  Q
    |||||||||| ||||| |||||||||||||  |||| | |||| | | | ||||||||||||||||||||||||||||| |||||||    
T  3966577 tgtccgacactgacacgacaccgacacatataattacactgaattgt-gtgattttctcaaattattagcggtgtcggcatgtcagt 3966492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 124 - 175
Target Start/End: Complemental strand, 21522766 - 21522715
Alignment:
Q  124 aaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagaccgt 175  Q
    ||||||||||| |||||||||||||||| |||||| ||||||||| ||||||    
T  21522766 aaattattagctgtgtcggcgtgtcagtgtccgtgtcgtgtccggtgaccgt 21522715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 124 - 175
Target Start/End: Complemental strand, 21533332 - 21533281
Alignment:
Q  124 aaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagaccgt 175  Q
    ||||||||||| |||||||||||||||| |||||| ||||||||| ||||||    
T  21533332 aaattattagctgtgtcggcgtgtcagtgtccgtgtcgtgtccggtgaccgt 21533281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 118 - 151
Target Start/End: Complemental strand, 6035505 - 6035472
Alignment:
Q  118 tttctcaaattattagcggtgtcggcgtgtcagt 151  Q
    ||||||||||||||||||||||||||||||||||    
T  6035505 tttctcaaattattagcggtgtcggcgtgtcagt 6035472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 33 - 82
Target Start/End: Complemental strand, 8420124 - 8420075
Alignment:
Q  33 aactatgaagcacggacactcctcgaattagccatgtccgacaccgacac 82  Q
    |||||||||||||||| |||||||||||||| |  |||||||||||||||    
T  8420124 aactatgaagcacggatactcctcgaattaggcgcgtccgacaccgacac 8420075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 115 - 168
Target Start/End: Original strand, 21191090 - 21191143
Alignment:
Q  115 gattttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccgg 168  Q
    |||||| ||||||||||||| |||||||| ||||||| |||||| |||||||||    
T  21191090 gattttttcaaattattagctgtgtcggcatgtcagtgtccgtgtcgtgtccgg 21191143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 35 - 87
Target Start/End: Complemental strand, 9929720 - 9929668
Alignment:
Q  35 ctatgaagcacggacactcctcgaattagccatgtccgacaccgacaccacac 87  Q
    ||||||||||| ||||||||||||||||| | ||||||| |||||||| ||||    
T  9929720 ctatgaagcacagacactcctcgaattagtcgtgtccgataccgacacgacac 9929668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 115 - 151
Target Start/End: Complemental strand, 17123073 - 17123037
Alignment:
Q  115 gattttctcaaattattagcggtgtcggcgtgtcagt 151  Q
    ||||||||||||||||||||||||| |||||||||||    
T  17123073 gattttctcaaattattagcggtgttggcgtgtcagt 17123037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 115 - 151
Target Start/End: Complemental strand, 27144488 - 27144452
Alignment:
Q  115 gattttctcaaattattagcggtgtcggcgtgtcagt 151  Q
    ||||| |||||||||||||||||||||||||||||||    
T  27144488 gatttcctcaaattattagcggtgtcggcgtgtcagt 27144452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 67 - 151
Target Start/End: Complemental strand, 11686012 - 11685928
Alignment:
Q  67 tgtccgacaccgacaccacaccgacacata--attataatgaaatatagcgattttctcaaattattagcggtgtcggcgtgtcagt 151  Q
    ||||||||||||| || |||||||||||||  |||| | | || ||| |||| |||||||||||||||||||||||||| |||||||    
T  11686012 tgtccgacaccga-acgacaccgacacatataattacactaaattat-gcgactttctcaaattattagcggtgtcggcatgtcagt 11685928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 115 - 158
Target Start/End: Complemental strand, 14674294 - 14674251
Alignment:
Q  115 gattttctcaaattattagcggtgtcggcgtgtcagtatccgtg 158  Q
    |||||| ||||||||||||| |||||||||||||||| ||||||    
T  14674294 gattttttcaaattattagctgtgtcggcgtgtcagtgtccgtg 14674251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 117 - 168
Target Start/End: Complemental strand, 15382500 - 15382449
Alignment:
Q  117 ttttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccgg 168  Q
    |||| ||||||||||||| |||||||||||||| | |||||| |||||||||    
T  15382500 ttttttcaaattattagctgtgtcggcgtgtcattgtccgtgtcgtgtccgg 15382449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 115 - 158
Target Start/End: Complemental strand, 19579726 - 19579683
Alignment:
Q  115 gattttctcaaattattagcggtgtcggcgtgtcagtatccgtg 158  Q
    |||||||||||||||||||| |||||||||| ||||| ||||||    
T  19579726 gattttctcaaattattagctgtgtcggcgtatcagtgtccgtg 19579683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 115 - 158
Target Start/End: Complemental strand, 34879375 - 34879332
Alignment:
Q  115 gattttctcaaattattagcggtgtcggcgtgtcagtatccgtg 158  Q
    |||||||||||||| ||||||||| ||||||||| |||||||||    
T  34879375 gattttctcaaatttttagcggtgccggcgtgtccgtatccgtg 34879332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 116 - 158
Target Start/End: Original strand, 5873548 - 5873590
Alignment:
Q  116 attttctcaaattattagcggtgtcggcgtgtcagtatccgtg 158  Q
    |||||||||||||||||| ||||||||| ||||||| ||||||    
T  5873548 attttctcaaattattagaggtgtcggcatgtcagtgtccgtg 5873590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 33 - 63
Target Start/End: Original strand, 24906250 - 24906280
Alignment:
Q  33 aactatgaagcacggacactcctcgaattag 63  Q
    |||||||||||||||||||||||||||||||    
T  24906250 aactatgaagcacggacactcctcgaattag 24906280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 116 - 146
Target Start/End: Complemental strand, 27932259 - 27932229
Alignment:
Q  116 attttctcaaattattagcggtgtcggcgtg 146  Q
    |||||||||||||||||||||||||||||||    
T  27932259 attttctcaaattattagcggtgtcggcgtg 27932229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 115 - 149
Target Start/End: Original strand, 28588708 - 28588742
Alignment:
Q  115 gattttctcaaattattagcggtgtcggcgtgtca 149  Q
    |||||||||||||||||| ||||||||||||||||    
T  28588708 gattttctcaaattattaccggtgtcggcgtgtca 28588742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 122 - 168
Target Start/End: Original strand, 36642803 - 36642849
Alignment:
Q  122 tcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccgg 168  Q
    ||||||||||| | |||||||||||||||| |||||| |||||||||    
T  36642803 tcaaattattaactgtgtcggcgtgtcagtgtccgtgtcgtgtccgg 36642849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 115 - 164
Target Start/End: Original strand, 19552577 - 19552626
Alignment:
Q  115 gattttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgt 164  Q
    |||||| ||||||||||| | |||||||||||||||| |||||| |||||    
T  19552577 gattttttcaaattattaactgtgtcggcgtgtcagtgtccgtgtcgtgt 19552626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 113 - 142
Target Start/End: Original strand, 32766975 - 32767004
Alignment:
Q  113 gcgattttctcaaattattagcggtgtcgg 142  Q
    ||||||||||||||||||||||||||||||    
T  32766975 gcgattttctcaaattattagcggtgtcgg 32767004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 123 - 151
Target Start/End: Complemental strand, 2436939 - 2436911
Alignment:
Q  123 caaattattagcggtgtcggcgtgtcagt 151  Q
    |||||||||||||||||||||||||||||    
T  2436939 caaattattagcggtgtcggcgtgtcagt 2436911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 116 - 168
Target Start/End: Complemental strand, 21137713 - 21137661
Alignment:
Q  116 attttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccgg 168  Q
    ||||||||| ||||||| || ||||||||||||||| ||||||  ||||||||    
T  21137713 attttctcagattattaccgatgtcggcgtgtcagtgtccgtgttgtgtccgg 21137661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 115 - 151
Target Start/End: Complemental strand, 31084348 - 31084312
Alignment:
Q  115 gattttctcaaattattagcggtgtcggcgtgtcagt 151  Q
    |||||| ||||||||||||| ||||||||||||||||    
T  31084348 gattttttcaaattattagctgtgtcggcgtgtcagt 31084312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 67 - 151
Target Start/End: Complemental strand, 41995543 - 41995460
Alignment:
Q  67 tgtccgacaccgacaccacaccgacacataattataatgaaatatagcgattttctcaaattattagcggtgtcggcgtgtcagt 151  Q
    ||||||||||||| ||  ||||||||| |||||| | |||| ||| | |||||| || |||||||||  ||||||||||||||||    
T  41995543 tgtccgacaccgatacggcaccgacacttaattacattgaattat-gtgattttttcgaattattagttgtgtcggcgtgtcagt 41995460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 53; Significance: 2e-21; HSPs: 41)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 67 - 168
Target Start/End: Complemental strand, 10294181 - 10294079
Alignment:
Q  67 tgtccgacaccgacaccacaccgacacata--attataatgaaatatagcgattttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgt 164  Q
    ||||||||||| |||| |||||||||||||  |||| | |||||||| |||||| |||||||||||||||||| ||||| |||||||||||||| |||||    
T  10294181 tgtccgacaccaacacgacaccgacacatataattacattgaaatat-gcgattatctcaaattattagcggtatcggcatgtcagtatccgtgtcgtgt 10294083  T
Q  165 ccgg 168  Q
    ||||    
T  10294082 ccgg 10294079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 115 - 175
Target Start/End: Complemental strand, 9027203 - 9027143
Alignment:
Q  115 gattttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagaccgt 175  Q
    |||| |||||||||||||||||||||||||||||||| |||||| ||||||||||| ||||    
T  9027203 gattatctcaaattattagcggtgtcggcgtgtcagtgtccgtgtcgtgtccggagtccgt 9027143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 67 - 168
Target Start/End: Complemental strand, 16766771 - 16766669
Alignment:
Q  67 tgtccgacaccgacaccacaccgacacat--aattataatgaaatatagcgattttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgt 164  Q
    |||||||||||||||| |||||||||| |  ||||| | |||| ||| | |||||| ||||||||||||| |||||||||||||||| ||| || |||||    
T  16766771 tgtccgacaccgacacgacaccgacacttgtaattacactgaattat-gtgattttttcaaattattagctgtgtcggcgtgtcagtgtccatgtcgtgt 16766673  T
Q  165 ccgg 168  Q
    ||||    
T  16766672 ccgg 16766669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 115 - 190
Target Start/End: Original strand, 853893 - 853968
Alignment:
Q  115 gattttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagaccgtattcgtgcttcatag 190  Q
    |||||| ||||||||||||  ||||||||||||||| ||||||| ||||||||| | |||||| |||| |||||||    
T  853893 gattttttcaaattattagttgtgtcggcgtgtcagcatccgtgtcgtgtccggtgtccgtatccgtgattcatag 853968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 35 - 166
Target Start/End: Original strand, 5732474 - 5732595
Alignment:
Q  35 ctatgaagcacggacactcctcgaattagccatgtccgacaccgacaccacaccgacacataattataatgaaatatagcgattttctcaaattattagc 134  Q
    |||||||||| |||||||||||| ||||| | ||||||||||||||||         | ||||||| | | |||||| | |||||||||||||||||| |    
T  5732474 ctatgaagcatggacactcctcggattaggcgtgtccgacaccgacac---------atataattacactaaaatat-gtgattttctcaaattattaac 5732563  T
Q  135 ggtgtcggcgtgtcagtatccgtgccgtgtcc 166  Q
    ||||||||||||||||| ||| || |||||||    
T  5732564 ggtgtcggcgtgtcagtgtccatgtcgtgtcc 5732595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 35 - 165
Target Start/End: Original strand, 8805524 - 8805656
Alignment:
Q  35 ctatgaagcacggacactcctcgaattagccatgtccgac---accgacaccacaccgacacataattataatgaaatatagcgattttctcaaattatt 131  Q
    ||||||||||||||||||||||| ||||| ||||||| ||    | ||||| ||||||||||||||||| | | || ||| | |||||||||||||||||    
T  8805524 ctatgaagcacggacactcctcggattaggcatgtcccacgtgtctgacactacaccgacacataattacactaaattat-gtgattttctcaaattatt 8805622  T
Q  132 agcggtgtcggcgtgtcagtatccgtgccgtgtc 165  Q
    ||| ||| || |||||| || || ||| ||||||    
T  8805623 agcagtgccgacgtgtcggtgtctgtgtcgtgtc 8805656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 115 - 166
Target Start/End: Complemental strand, 9629408 - 9629357
Alignment:
Q  115 gattttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtcc 166  Q
    ||||||||||||||||| ||||||||||||||||| |||||||| |||||||    
T  9629408 gattttctcaaattattggcggtgtcggcgtgtcaatatccgtgtcgtgtcc 9629357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 115 - 165
Target Start/End: Complemental strand, 9658904 - 9658854
Alignment:
Q  115 gattttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtc 165  Q
    |||||||| |||||||||||||||||||||||||||| |||||| ||||||    
T  9658904 gattttcttaaattattagcggtgtcggcgtgtcagtgtccgtgtcgtgtc 9658854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 115 - 153
Target Start/End: Complemental strand, 19040377 - 19040339
Alignment:
Q  115 gattttctcaaattattagcggtgtcggcgtgtcagtat 153  Q
    |||||||||||||||||||||||||||||||||||||||    
T  19040377 gattttctcaaattattagcggtgtcggcgtgtcagtat 19040339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 115 - 168
Target Start/End: Original strand, 5000660 - 5000713
Alignment:
Q  115 gattttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccgg 168  Q
    ||||||||| ||||||||||||||||| |||||||||||||||| | |||||||    
T  5000660 gattttctcgaattattagcggtgtcgacgtgtcagtatccgtgtcatgtccgg 5000713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 122 - 190
Target Start/End: Original strand, 8365560 - 8365628
Alignment:
Q  122 tcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagaccgtattcgtgcttcatag 190  Q
    ||||||||||||  |||||||||||||||| |||||| |||||| || | |||||| ||||||||||||    
T  8365560 tcaaattattagttgtgtcggcgtgtcagtgtccgtgtcgtgtctggtgtccgtatccgtgcttcatag 8365628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 67 - 168
Target Start/End: Original strand, 9107355 - 9107457
Alignment:
Q  67 tgtccgacaccgacaccacaccgacacat--aattataatgaaatatagcgattttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgt 164  Q
    |||||||||||||||| |||||||||| |  ||||| | |||| | | | |||||| ||||||||||||| |||||||||||| ||| |||||| |||||    
T  9107355 tgtccgacaccgacacgacaccgacacttgtaattacactgaatttt-gtgattttttcaaattattagctgtgtcggcgtgttagtgtccgtgtcgtgt 9107453  T
Q  165 ccgg 168  Q
    ||||    
T  9107454 ccgg 9107457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 116 - 188
Target Start/End: Complemental strand, 12696348 - 12696277
Alignment:
Q  116 attttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagaccgtattcgtgcttcat 188  Q
    ||||| ||||||||||||| |||||||||||||||| |||||| ||||||| | | |||||| ||||||||||    
T  12696348 attttttcaaattattagctgtgtcggcgtgtcagtgtccgtgtcgtgtcc-gtgtccgtatccgtgcttcat 12696277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 116 - 164
Target Start/End: Complemental strand, 13851760 - 13851712
Alignment:
Q  116 attttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgt 164  Q
    |||||||||||||||||||||||||| ||||||||| |||||| |||||    
T  13851760 attttctcaaattattagcggtgtcgacgtgtcagtgtccgtgtcgtgt 13851712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 115 - 158
Target Start/End: Original strand, 20371144 - 20371187
Alignment:
Q  115 gattttctcaaattattagcggtgtcggcgtgtcagtatccgtg 158  Q
    ||||||||||||||||||||||||||||||||||| | ||||||    
T  20371144 gattttctcaaattattagcggtgtcggcgtgtcaatgtccgtg 20371187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 115 - 190
Target Start/End: Original strand, 30866178 - 30866253
Alignment:
Q  115 gattttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagaccgtattcgtgcttcatag 190  Q
    ||||||||||||||||||||||||| || ||||| || || ||| | ||||||| | |||||||||| ||||||||    
T  30866178 gattttctcaaattattagcggtgttggtgtgtcggtgtcagtgtcatgtccggtgtccgtattcgtacttcatag 30866253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 116 - 190
Target Start/End: Complemental strand, 6389767 - 6389693
Alignment:
Q  116 attttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagaccgtattcgtgcttcatag 190  Q
    ||||||||||||||||| | |||||||||||| ||| |||||| ||||||||| | | || | ||||||||||||    
T  6389767 attttctcaaattattatccgtgtcggcgtgtgagtgtccgtgtcgtgtccggtgtctgtgtccgtgcttcatag 6389693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 116 - 166
Target Start/End: Original strand, 7977865 - 7977915
Alignment:
Q  116 attttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtcc 166  Q
    ||||| ||||||||||||| |||||||||||||||||||| || |||||||    
T  7977865 attttttcaaattattagctgtgtcggcgtgtcagtatccatgtcgtgtcc 7977915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 115 - 168
Target Start/End: Original strand, 426548 - 426601
Alignment:
Q  115 gattttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccgg 168  Q
    |||||| ||||||||||| | |||||||||||||||| |||||| |||||||||    
T  426548 gattttttcaaattattaactgtgtcggcgtgtcagtgtccgtgtcgtgtccgg 426601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 115 - 156
Target Start/End: Original strand, 7265627 - 7265668
Alignment:
Q  115 gattttctcaaattattagcggtgtcggcgtgtcagtatccg 156  Q
    ||||||||||||||||||||||||| ||||||||||| ||||    
T  7265627 gattttctcaaattattagcggtgttggcgtgtcagtgtccg 7265668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 115 - 168
Target Start/End: Complemental strand, 7938141 - 7938088
Alignment:
Q  115 gattttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccgg 168  Q
    |||||| ||||||||||||| |||||||||||||||| ||| || |||||||||    
T  7938141 gattttttcaaattattagctgtgtcggcgtgtcagtgtccatgtcgtgtccgg 7938088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 72 - 166
Target Start/End: Original strand, 34073337 - 34073432
Alignment:
Q  72 gacaccgacaccacaccgacacata--attataatgaaatatagcgattttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtcc 166  Q
    ||||||||||| |||||||| ||||  |||| | |||| ||| | ||||||||||||||||||||| ||| ||| ||||||| |||||| |||||||    
T  34073337 gacaccgacacgacaccgacccatataattacactgaattat-gagattttctcaaattattagcgatgttggcatgtcagtgtccgtgtcgtgtcc 34073432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 122 - 190
Target Start/End: Complemental strand, 3398637 - 3398569
Alignment:
Q  122 tcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagaccgtattcgtgcttcatag 190  Q
    ||||||||||||| |||||||||||||||| |||||| ||||| ||  | |||||| | ||||||||||    
T  3398637 tcaaattattagctgtgtcggcgtgtcagtgtccgtgtcgtgttcgatgtccgtatccatgcttcatag 3398569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 115 - 167
Target Start/End: Original strand, 8777007 - 8777059
Alignment:
Q  115 gattttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccg 167  Q
    |||||| ||||||||||||  |||||||||||||||| |||||| ||||||||    
T  8777007 gattttttcaaattattagttgtgtcggcgtgtcagtgtccgtgtcgtgtccg 8777059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 35 - 82
Target Start/End: Original strand, 426478 - 426525
Alignment:
Q  35 ctatgaagcacggacactcctcgaattagccatgtccgacaccgacac 82  Q
    ||||||||||||||||||||||  ||||| | ||||||||||||||||    
T  426478 ctatgaagcacggacactcctcagattaggcgtgtccgacaccgacac 426525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 115 - 158
Target Start/End: Original strand, 17841623 - 17841666
Alignment:
Q  115 gattttctcaaattattagcggtgtcggcgtgtcagtatccgtg 158  Q
    |||||| ||||||||||||| |||||||||||||||| ||||||    
T  17841623 gattttttcaaattattagctgtgtcggcgtgtcagtgtccgtg 17841666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 84 - 167
Target Start/End: Original strand, 31579229 - 31579311
Alignment:
Q  84 acaccgacacataattataatgaaatatagcgattttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccg 167  Q
    ||||||||||||||||| | |||| ||| | |||||||||||||||||| |||||| || ||| |||| ||| || ||||||||    
T  31579229 acaccgacacataattacactgaattat-gtgattttctcaaattattaacggtgttggtgtggcagtgtccatgtcgtgtccg 31579311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 33 - 63
Target Start/End: Original strand, 34073276 - 34073306
Alignment:
Q  33 aactatgaagcacggacactcctcgaattag 63  Q
    |||||||||||||||||||||||||||||||    
T  34073276 aactatgaagcacggacactcctcgaattag 34073306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 35 - 76
Target Start/End: Complemental strand, 2117175 - 2117134
Alignment:
Q  35 ctatgaagcacggacactcctcgaattagccatgtccgacac 76  Q
    ||||||||||||||||||||||  ||||| ||||||||||||    
T  2117175 ctatgaagcacggacactcctccgattaggcatgtccgacac 2117134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 115 - 148
Target Start/End: Complemental strand, 10842557 - 10842524
Alignment:
Q  115 gattttctcaaattattagcggtgtcggcgtgtc 148  Q
    |||||| |||||||||||||||||||||||||||    
T  10842557 gattttttcaaattattagcggtgtcggcgtgtc 10842524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 71 - 165
Target Start/End: Complemental strand, 26562759 - 26562664
Alignment:
Q  71 cgacaccgacaccacaccgacacata--attataatgaaatatagcgattttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtc 165  Q
    |||||||||||| ||| |||||||||  |||| | |||| ||| | |||||||||||||| ||||| ||||||||||||| || | ||||| |||||    
T  26562759 cgacaccgacacgacatcgacacatataattacactgaattat-gtgattttctcaaatttttagcagtgtcggcgtgtccgtgttcgtgcggtgtc 26562664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 115 - 168
Target Start/End: Complemental strand, 34595159 - 34595106
Alignment:
Q  115 gattttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccgg 168  Q
    |||||| ||||||||||||  |||||||||||||| | |||||| |||||||||    
T  34595159 gattttttcaaattattagttgtgtcggcgtgtcattgtccgtgtcgtgtccgg 34595106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 115 - 151
Target Start/End: Complemental strand, 677862 - 677826
Alignment:
Q  115 gattttctcaaattattagcggtgtcggcgtgtcagt 151  Q
    |||||||||||||||||| | ||||||||||||||||    
T  677862 gattttctcaaattattaacagtgtcggcgtgtcagt 677826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 115 - 151
Target Start/End: Original strand, 7996412 - 7996448
Alignment:
Q  115 gattttctcaaattattagcggtgtcggcgtgtcagt 151  Q
    |||||||||||||||||||| |||||||| |||||||    
T  7996412 gattttctcaaattattagcagtgtcggcatgtcagt 7996448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #35
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 115 - 151
Target Start/End: Complemental strand, 8022389 - 8022353
Alignment:
Q  115 gattttctcaaattattagcggtgtcggcgtgtcagt 151  Q
    |||||||||||||||||||| |||||||| |||||||    
T  8022389 gattttctcaaattattagcagtgtcggcatgtcagt 8022353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #36
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 115 - 151
Target Start/End: Original strand, 10339160 - 10339196
Alignment:
Q  115 gattttctcaaattattagcggtgtcggcgtgtcagt 151  Q
    ||||||||||||||| | |||||||||||||||||||    
T  10339160 gattttctcaaattaatcgcggtgtcggcgtgtcagt 10339196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #37
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 115 - 167
Target Start/End: Complemental strand, 16833333 - 16833281
Alignment:
Q  115 gattttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccg 167  Q
    |||||| ||||||||||||  |||||||||||||||| || ||| ||||||||    
T  16833333 gattttttcaaattattagttgtgtcggcgtgtcagtgtctgtgtcgtgtccg 16833281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #38
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 115 - 151
Target Start/End: Original strand, 17341698 - 17341734
Alignment:
Q  115 gattttctcaaattattagcggtgtcggcgtgtcagt 151  Q
    |||||| ||||||||||| ||||||||||||||||||    
T  17341698 gattttatcaaattattaacggtgtcggcgtgtcagt 17341734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #39
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 116 - 148
Target Start/End: Original strand, 21395342 - 21395374
Alignment:
Q  116 attttctcaaattattagcggtgtcggcgtgtc 148  Q
    |||||||||||||||||||||||| ||||||||    
T  21395342 attttctcaaattattagcggtgttggcgtgtc 21395374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #40
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 115 - 151
Target Start/End: Original strand, 21424836 - 21424872
Alignment:
Q  115 gattttctcaaattattagcggtgtcggcgtgtcagt 151  Q
    |||||| |||||||||||||||||| |||||||||||    
T  21424836 gattttttcaaattattagcggtgttggcgtgtcagt 21424872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #41
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 67 - 151
Target Start/End: Original strand, 34290064 - 34290147
Alignment:
Q  67 tgtccgacaccgacaccacaccgacacataattataatgaaatatagcgattttctcaaattattagcggtgtcggcgtgtcagt 151  Q
    |||| ||||| ||||| ||||||||||||||||| | |||| ||| | |||| || |||||||||||  |||||||| |||||||    
T  34290064 tgtcggacactgacacgacaccgacacataattacactgaattat-gtgattctcgcaaattattagttgtgtcggcatgtcagt 34290147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 51; Significance: 3e-20; HSPs: 36)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 116 - 190
Target Start/End: Complemental strand, 27945065 - 27944991
Alignment:
Q  116 attttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagaccgtattcgtgcttcatag 190  Q
    |||||||||||||||||| ||||||||||||||||| |||||| ||||||||| | |||||| ||||||||||||    
T  27945065 attttctcaaattattagtggtgtcggcgtgtcagtgtccgtgtcgtgtccggtgtccgtatccgtgcttcatag 27944991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 65 - 147
Target Start/End: Original strand, 29787354 - 29787435
Alignment:
Q  65 catgtccgacaccgacaccacaccgacacataattataatgaaatatagcgattttctcaaattattagcggtgtcggcgtgt 147  Q
    ||||||| |||||||||  ||||| ||||||||||| | |||| ||| | |||||||||||||||||||||||||||||||||    
T  29787354 catgtccaacaccgacattacaccaacacataattacactgaattat-gtgattttctcaaattattagcggtgtcggcgtgt 29787435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 115 - 168
Target Start/End: Original strand, 11722132 - 11722185
Alignment:
Q  115 gattttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccgg 168  Q
    |||||||||||||| |||||||||||||||||||||| |||||| |||||||||    
T  11722132 gattttctcaaattgttagcggtgtcggcgtgtcagtgtccgtgtcgtgtccgg 11722185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 84 - 165
Target Start/End: Complemental strand, 19206107 - 19206025
Alignment:
Q  84 acaccgacacata--attataatgaaatatagcgattttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtc 165  Q
    |||||||||||||  ||||||||||| ||| | |||||||||||||||||||||||||||||||||  || |||||| ||||||    
T  19206107 acaccgacacatataattataatgaattat-gtgattttctcaaattattagcggtgtcggcgtgttggtgtccgtgtcgtgtc 19206025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 67 - 151
Target Start/End: Complemental strand, 32308194 - 32308109
Alignment:
Q  67 tgtccgacaccgacaccacaccgacacata--attataatgaaatatagcgattttctcaaattattagcggtgtcggcgtgtcagt 151  Q
    ||||| |||||||||| |||| ||||||||  |||| | |||| ||| | |||||||||||||||||||||||||||||||||||||    
T  32308194 tgtccaacaccgacacgacactgacacatacaattacactgaattat-gtgattttctcaaattattagcggtgtcggcgtgtcagt 32308109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 116 - 190
Target Start/End: Complemental strand, 24105702 - 24105629
Alignment:
Q  116 attttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagaccgtattcgtgcttcatag 190  Q
    ||||| ||||||||||||| |||||||||||||||| |||||| |||||||| |  |||||| ||||||||||||    
T  24105702 attttttcaaattattagctgtgtcggcgtgtcagtgtccgtgtcgtgtccgta-tccgtatccgtgcttcatag 24105629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 35 - 145
Target Start/End: Complemental strand, 11700909 - 11700798
Alignment:
Q  35 ctatgaagcacggacactcctcgaattagccatgt--ccgacaccgacaccacaccgacacataattataatgaaatatagcgattttctcaaattatta 132  Q
    ||||||| || |||||||||||| ||||||| |||  |||||||||| || |||| |||||||||||| | |||| ||| | |||||| |||||||||||    
T  11700909 ctatgaatcagggacactcctcggattagccgtgtgtccgacaccgagacaacacagacacataattacattgaattat-gtgattttgtcaaattatta 11700811  T
Q  133 gcggtgtcggcgt 145  Q
     ||||||| ||||    
T  11700810 acggtgtcagcgt 11700798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 67 - 177
Target Start/End: Complemental strand, 24339716 - 24339605
Alignment:
Q  67 tgtccgacaccgacaccacaccgacacat--aattataatgaaatatagcgattttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgt 164  Q
    |||||||||||||||| |||||||||| |  ||||| | |||| ||| | |||||| ||||||||||||| |||||||||||||| | ||| || |||||    
T  24339716 tgtccgacaccgacacgacaccgacacttgtaattacactgaattat-gtgattttttcaaattattagctgtgtcggcgtgtcaatgtccatgtcgtgt 24339618  T
Q  165 ccggagaccgtat 177  Q
    |||| | ||||||    
T  24339617 ccggtgtccgtat 24339605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 115 - 166
Target Start/End: Original strand, 2425767 - 2425818
Alignment:
Q  115 gattttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtcc 166  Q
    |||||||||||||||||| ||||| ||||||||||||||| ||| |||||||    
T  2425767 gattttctcaaattattaacggtgccggcgtgtcagtatctgtgtcgtgtcc 2425818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 115 - 157
Target Start/End: Original strand, 8046061 - 8046103
Alignment:
Q  115 gattttctcaaattattagcggtgtcggcgtgtcagtatccgt 157  Q
    ||||||||||||||||||| ||||| |||||||||||||||||    
T  8046061 gattttctcaaattattagtggtgttggcgtgtcagtatccgt 8046103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 84 - 151
Target Start/End: Complemental strand, 22484082 - 22484014
Alignment:
Q  84 acaccgacacata--attataatgaaatatagcgattttctcaaattattagcggtgtcggcgtgtcagt 151  Q
    |||||||||||||  |||||| |||| ||| || ||||||| ||||||||||||||||||||||||||||    
T  22484082 acaccgacacatataattatactgaattat-gcaattttctaaaattattagcggtgtcggcgtgtcagt 22484014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 115 - 157
Target Start/End: Complemental strand, 23191921 - 23191879
Alignment:
Q  115 gattttctcaaattattagcggtgtcggcgtgtcagtatccgt 157  Q
    ||||||||||||||||||||||||||||||| ||||| |||||    
T  23191921 gattttctcaaattattagcggtgtcggcgtatcagtgtccgt 23191879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 115 - 165
Target Start/End: Complemental strand, 26733329 - 26733279
Alignment:
Q  115 gattttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtc 165  Q
    |||||| |||||||||||||||||||| ||||||||| |||||| ||||||    
T  26733329 gattttgtcaaattattagcggtgtcgacgtgtcagtgtccgtgtcgtgtc 26733279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 72 - 146
Target Start/End: Complemental strand, 30731104 - 30731031
Alignment:
Q  72 gacaccgacaccacaccgacacataattataatgaaatatagcgattttctcaaattattagcggtgtcggcgtg 146  Q
    |||||| |||| ||||||||||| ||||| | |||| ||| | ||||||||||||||||| ||||||||||||||    
T  30731104 gacaccaacacgacaccgacacacaattacactgaattat-gtgattttctcaaattattcgcggtgtcggcgtg 30731031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 115 - 164
Target Start/End: Complemental strand, 1433479 - 1433430
Alignment:
Q  115 gattttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgt 164  Q
    |||||||||||||||||| |||||||||||||||| | |||||| |||||    
T  1433479 gattttctcaaattattaacggtgtcggcgtgtcaatgtccgtgtcgtgt 1433430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 75 - 148
Target Start/End: Complemental strand, 11072362 - 11072290
Alignment:
Q  75 accgacaccacaccgacacataattataatgaaatatagcgattttctcaaattattagcggtgtcggcgtgtc 148  Q
    |||||||| ||||||||||||||||||| |||| ||||    |||| ||||||||||| |||||||||||||||    
T  11072362 accgacacgacaccgacacataattatattgaattata-tatttttttcaaattattatcggtgtcggcgtgtc 11072290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 117 - 166
Target Start/End: Complemental strand, 49107844 - 49107795
Alignment:
Q  117 ttttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtcc 166  Q
    |||||||||||||||||||||||||| |||||||  |||||| |||||||    
T  49107844 ttttctcaaattattagcggtgtcggtgtgtcagagtccgtgtcgtgtcc 49107795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 35 - 195
Target Start/End: Original strand, 7328639 - 7328805
Alignment:
Q  35 ctatgaagcacggacactcctcgaattagccatgtccgacacc-----gacaccacaccgacacata--attataatgaaatatagcgattttctcaaat 127  Q
    |||||||||||| |||||| ||| ||||| | |||||||||||     ||||| |||||||||||||  |||| | | || ||| |  ||||||||||||    
T  7328639 ctatgaagcacgaacactcatcggattaggcgtgtccgacaccaacacgacacgacaccgacacatataattacactaaattat-gttattttctcaaat 7328737  T
Q  128 tattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagaccgtattcgtgcttcatagtatat 195  Q
    ||||||| || ||| ||||| | | || ||| ||||| ||| | |||||| |||||||||||||||||    
T  7328738 tattagcagtatcgacgtgttaatgtctgtgtcgtgttcggtgtccgtatccgtgcttcatagtatat 7328805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 115 - 151
Target Start/End: Complemental strand, 20549816 - 20549780
Alignment:
Q  115 gattttctcaaattattagcggtgtcggcgtgtcagt 151  Q
    |||||||||||||||||||||||||||| ||||||||    
T  20549816 gattttctcaaattattagcggtgtcggtgtgtcagt 20549780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 116 - 168
Target Start/End: Complemental strand, 43250017 - 43249965
Alignment:
Q  116 attttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccgg 168  Q
    ||||||||||||||||| | |||||||||||||||| |||||| | |||||||    
T  43250017 attttctcaaattattatccgtgtcggcgtgtcagtgtccgtgtcttgtccgg 43249965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 119 - 190
Target Start/End: Complemental strand, 2034462 - 2034392
Alignment:
Q  119 ttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagaccgtattcgtgcttcatag 190  Q
    ||||||||||||||| ||||||| ||||| |||||||||| |||||| | |  |||||| ||||||||||||    
T  2034462 ttctcaaattattagtggtgtcgacgtgtaagtatccgtgtcgtgtcagta-tccgtatccgtgcttcatag 2034392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 115 - 154
Target Start/End: Complemental strand, 2948708 - 2948669
Alignment:
Q  115 gattttctcaaattattagcggtgtcggcgtgtcagtatc 154  Q
    |||||||| ||||||| |||||||||||||||||||||||    
T  2948708 gattttctaaaattatcagcggtgtcggcgtgtcagtatc 2948669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 67 - 151
Target Start/End: Original strand, 6630897 - 6630982
Alignment:
Q  67 tgtccgacaccgacaccacaccgacacata--attataatgaaatatagcgattttctcaaattattagcggtgtcggcgtgtcagt 151  Q
    ||||||||||| |||| ||| |||||||||  |||| | |||| || || || |||||||||||||||| |||||||||||||||||    
T  6630897 tgtccgacaccaacacgacatcgacacatataattacactgaatta-agtgactttctcaaattattagtggtgtcggcgtgtcagt 6630982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 115 - 158
Target Start/End: Original strand, 21828439 - 21828482
Alignment:
Q  115 gattttctcaaattattagcggtgtcggcgtgtcagtatccgtg 158  Q
    ||||||||||||||| || |||||||||||||||||| ||||||    
T  21828439 gattttctcaaattactaacggtgtcggcgtgtcagtgtccgtg 21828482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 116 - 147
Target Start/End: Complemental strand, 28155594 - 28155563
Alignment:
Q  116 attttctcaaattattagcggtgtcggcgtgt 147  Q
    ||||||||||||||||||||||||||||||||    
T  28155594 attttctcaaattattagcggtgtcggcgtgt 28155563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 115 - 190
Target Start/End: Original strand, 43027503 - 43027578
Alignment:
Q  115 gattttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagaccgtattcgtgcttcatag 190  Q
    |||||| ||||||||||||| | |||| ||||||||| |||||| ||||||| | | ||| || ||||||||||||    
T  43027503 gattttttcaaattattagctgggtcgccgtgtcagtgtccgtgtcgtgtccagtgtccgcatccgtgcttcatag 43027578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 116 - 166
Target Start/End: Complemental strand, 5236010 - 5235960
Alignment:
Q  116 attttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtcc 166  Q
    ||||||| |||||||||||||||||| ||||||||| || ||| |||||||    
T  5236010 attttcttaaattattagcggtgtcgacgtgtcagtgtctgtgtcgtgtcc 5235960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 67 - 133
Target Start/End: Complemental strand, 9933347 - 9933282
Alignment:
Q  67 tgtccgacaccgacaccacaccgacacataattataatgaaatatagcgattttctcaaattattag 133  Q
    |||||||||||||||| |||| ||||||||| | || |||||||| | |||||| ||||||||||||    
T  9933347 tgtccgacaccgacacgacactgacacataagtttactgaaatat-gtgattttttcaaattattag 9933282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 115 - 157
Target Start/End: Original strand, 20545270 - 20545312
Alignment:
Q  115 gattttctcaaattattagcggtgtcggcgtgtcagtatccgt 157  Q
    |||||| |||||||||||||||||| |||||||| ||||||||    
T  20545270 gattttttcaaattattagcggtgttggcgtgtccgtatccgt 20545312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 117 - 166
Target Start/End: Original strand, 4017830 - 4017879
Alignment:
Q  117 ttttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtcc 166  Q
    |||||||||||||||| | ||||||||||||| || |||||| |||||||    
T  4017830 ttttctcaaattattatccgtgtcggcgtgtcggtgtccgtgtcgtgtcc 4017879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 34 - 63
Target Start/End: Complemental strand, 17852120 - 17852091
Alignment:
Q  34 actatgaagcacggacactcctcgaattag 63  Q
    ||||||||||||||||||||||||||||||    
T  17852120 actatgaagcacggacactcctcgaattag 17852091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 118 - 151
Target Start/End: Complemental strand, 25791675 - 25791642
Alignment:
Q  118 tttctcaaattattagcggtgtcggcgtgtcagt 151  Q
    |||||||||| |||||||||||||||||||||||    
T  25791675 tttctcaaataattagcggtgtcggcgtgtcagt 25791642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 117 - 166
Target Start/End: Original strand, 26329418 - 26329467
Alignment:
Q  117 ttttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtcc 166  Q
    |||||||||||||||| || ||||||||||||||| || ||| |||||||    
T  26329418 ttttctcaaattattaacgatgtcggcgtgtcagtgtctgtgtcgtgtcc 26329467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 115 - 167
Target Start/End: Original strand, 11061110 - 11061162
Alignment:
Q  115 gattttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccg 167  Q
    |||||| ||||||||||||| ||||||| |||||||| |||||| ||| ||||    
T  11061110 gattttttcaaattattagctgtgtcggtgtgtcagtgtccgtgtcgtatccg 11061162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 35 - 63
Target Start/End: Complemental strand, 15680928 - 15680900
Alignment:
Q  35 ctatgaagcacggacactcctcgaattag 63  Q
    |||||||||||||||||||||||||||||    
T  15680928 ctatgaagcacggacactcctcgaattag 15680900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 115 - 151
Target Start/End: Complemental strand, 22868067 - 22868031
Alignment:
Q  115 gattttctcaaattattagcggtgtcggcgtgtcagt 151  Q
    |||||||||| |||||||| |||||||||||||||||    
T  22868067 gattttctcatattattagtggtgtcggcgtgtcagt 22868031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 49; Significance: 5e-19; HSPs: 19)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 67 - 168
Target Start/End: Complemental strand, 22652050 - 22651948
Alignment:
Q  67 tgtccgacaccgacaccacaccgacacat--aattataatgaaatatagcgattttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgt 164  Q
    |||||||||||||||| |||||||||| |  ||||||| |||| ||| | |||||| ||||||||||||| |||||||||||||||| |||||| |||||    
T  22652050 tgtccgacaccgacacgacaccgacacttgtaattatattgaattat-gtgattttttcaaattattagctgtgtcggcgtgtcagtgtccgtgtcgtgt 22651952  T
Q  165 ccgg 168  Q
    ||||    
T  22651951 ccgg 22651948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 67 - 168
Target Start/End: Original strand, 29510289 - 29510391
Alignment:
Q  67 tgtccgacaccgacaccacaccgacacat--aattataatgaaatatagcgattttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgt 164  Q
    |||||||||||||||| |||||||||| |  ||||||| |||| | | | |||||| ||||||||||||| |||||||||||||||| |||||| |||||    
T  29510289 tgtccgacaccgacactacaccgacacttgtaattatactgaatttt-gtgattttttcaaattattagctgtgtcggcgtgtcagtgtccgtgtcgtgt 29510387  T
Q  165 ccgg 168  Q
    ||||    
T  29510388 ccgg 29510391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 122 - 190
Target Start/End: Original strand, 25192388 - 25192456
Alignment:
Q  122 tcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagaccgtattcgtgcttcatag 190  Q
    ||||||||||||| |||||||||||||||| |||||  ||||||||  | |||||||||||||||||||    
T  25192388 tcaaattattagctgtgtcggcgtgtcagtgtccgtatcgtgtccgatgtccgtattcgtgcttcatag 25192456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 115 - 168
Target Start/End: Complemental strand, 27213572 - 27213519
Alignment:
Q  115 gattttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccgg 168  Q
    |||||||| ||||||||||| ||||||||||||| ||||||||| |||||||||    
T  27213572 gattttctgaaattattagcagtgtcggcgtgtctgtatccgtgtcgtgtccgg 27213519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 115 - 158
Target Start/End: Original strand, 31109552 - 31109595
Alignment:
Q  115 gattttctcaaattattagcggtgtcggcgtgtcagtatccgtg 158  Q
    |||||||||||||||||| |||||||||||||||||| ||||||    
T  31109552 gattttctcaaattattaacggtgtcggcgtgtcagtgtccgtg 31109595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 115 - 181
Target Start/End: Original strand, 926822 - 926888
Alignment:
Q  115 gattttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagaccgtattcgt 181  Q
    |||||||||||||||||||  |||| ||||||||||| |||||| ||||||||| | |||| |||||    
T  926822 gattttctcaaattattaggagtgttggcgtgtcagtgtccgtgtcgtgtccggtgtccgtgttcgt 926888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 122 - 167
Target Start/End: Original strand, 126390 - 126435
Alignment:
Q  122 tcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccg 167  Q
    |||||||||||||||||| |||||||||||||||||  ||||||||    
T  126390 tcaaattattagcggtgttggcgtgtcagtatccgtatcgtgtccg 126435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 115 - 148
Target Start/End: Original strand, 39954313 - 39954346
Alignment:
Q  115 gattttctcaaattattagcggtgtcggcgtgtc 148  Q
    ||||||||||||||||||||||||||||||||||    
T  39954313 gattttctcaaattattagcggtgtcggcgtgtc 39954346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 115 - 155
Target Start/End: Original strand, 31236611 - 31236651
Alignment:
Q  115 gattttctcaaattattagcggtgtcggcgtgtcagtatcc 155  Q
    |||||||||||||||||||| ||||||||||||| ||||||    
T  31236611 gattttctcaaattattagcagtgtcggcgtgtccgtatcc 31236651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 82 - 158
Target Start/End: Original strand, 37283812 - 37283887
Alignment:
Q  82 ccacaccgacacataattataatgaaatatagcgattttctcaaattattagcggtgtcggcgtgtcagtatccgtg 158  Q
    ||||||||||||||||||| | |||| ||| | |||||||||| ||||||||||||| | || ||||||| ||||||    
T  37283812 ccacaccgacacataattacactgaattat-gtgattttctcagattattagcggtgcccgcatgtcagtgtccgtg 37283887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 115 - 190
Target Start/End: Original strand, 13436998 - 13437073
Alignment:
Q  115 gattttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagaccgtattcgtgcttcatag 190  Q
    |||||| ||||||||||||| |||||||||||||||| ||| || | ||||||| | || | | ||||||||||||    
T  13436998 gattttttcaaattattagctgtgtcggcgtgtcagtgtccatgtcatgtccggtgtccatgtccgtgcttcatag 13437073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 115 - 177
Target Start/End: Original strand, 24362236 - 24362298
Alignment:
Q  115 gattttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagaccgtat 177  Q
    |||| ||||||||||||||||||||||||||||| || || ||| ||| ||||| | ||||||    
T  24362236 gattctctcaaattattagcggtgtcggcgtgtcggtgtctgtgtcgtatccggtgtccgtat 24362298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 115 - 149
Target Start/End: Complemental strand, 27101540 - 27101506
Alignment:
Q  115 gattttctcaaattattagcggtgtcggcgtgtca 149  Q
    |||||| ||||||||||||||||||||||||||||    
T  27101540 gattttttcaaattattagcggtgtcggcgtgtca 27101506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 115 - 157
Target Start/End: Complemental strand, 34897110 - 34897068
Alignment:
Q  115 gattttctcaaattattagcggtgtcggcgtgtcagtatccgt 157  Q
    ||||||||||||||||||||||||||| |||||| || |||||    
T  34897110 gattttctcaaattattagcggtgtcgacgtgtctgtgtccgt 34897068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 115 - 148
Target Start/End: Original strand, 13844630 - 13844663
Alignment:
Q  115 gattttctcaaattattagcggtgtcggcgtgtc 148  Q
    |||||||||||||||||||| |||||||||||||    
T  13844630 gattttctcaaattattagcagtgtcggcgtgtc 13844663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 115 - 167
Target Start/End: Original strand, 4298920 - 4298972
Alignment:
Q  115 gattttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccg 167  Q
    |||||| ||||||||||| | |||||||||||| |||||| ||| ||||||||    
T  4298920 gattttttcaaattattaactgtgtcggcgtgttagtatctgtgtcgtgtccg 4298972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 115 - 167
Target Start/End: Original strand, 4673459 - 4673511
Alignment:
Q  115 gattttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccg 167  Q
    |||||| ||||||||||| | |||||||||||||||| || ||| ||||||||    
T  4673459 gattttttcaaattattatctgtgtcggcgtgtcagtgtctgtgtcgtgtccg 4673511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 115 - 167
Target Start/End: Complemental strand, 20873094 - 20873042
Alignment:
Q  115 gattttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccg 167  Q
    |||||| ||||||||||| |  ||||||||||||||| |||||| ||||||||    
T  20873094 gattttttcaaattattatctatgtcggcgtgtcagtgtccgtgtcgtgtccg 20873042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 67 - 163
Target Start/End: Complemental strand, 29776108 - 29776013
Alignment:
Q  67 tgtccgacaccgacaccacaccgacacataattataatgaaatatagcgattttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtg 163  Q
    |||||||||| |||   ||||||||| ||||||||| |||| ||  | |||||||||||||||||||| |||||| | ||||| | |||||| ||||    
T  29776108 tgtccgacactgacttaacaccgacatataattatactgaattac-gtgattttctcaaattattagcagtgtcgacttgtcaatgtccgtgtcgtg 29776013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 45; Significance: 1e-16; HSPs: 35)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 115 - 167
Target Start/End: Complemental strand, 6427375 - 6427323
Alignment:
Q  115 gattttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccg 167  Q
    ||||||||||||||||||||||||| ||||||||||| |||||||||||||||    
T  6427375 gattttctcaaattattagcggtgttggcgtgtcagtgtccgtgccgtgtccg 6427323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 115 - 168
Target Start/End: Original strand, 398799 - 398852
Alignment:
Q  115 gattttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccgg 168  Q
    |||||| |||||||||||||||||||||||||||||| |||||| |||||||||    
T  398799 gattttttcaaattattagcggtgtcggcgtgtcagtgtccgtgtcgtgtccgg 398852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 115 - 168
Target Start/End: Complemental strand, 40917776 - 40917723
Alignment:
Q  115 gattttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccgg 168  Q
    |||||| ||||||||||||| ||||||||||||||||||||||| |||||||||    
T  40917776 gattttttcaaattattagctgtgtcggcgtgtcagtatccgtgtcgtgtccgg 40917723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 115 - 167
Target Start/End: Original strand, 2896155 - 2896207
Alignment:
Q  115 gattttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccg 167  Q
    ||||||||||||||||||||||||||||||||||||| ||||||  |||||||    
T  2896155 gattttctcaaattattagcggtgtcggcgtgtcagtgtccgtgttgtgtccg 2896207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 116 - 169
Target Start/End: Original strand, 5376535 - 5376588
Alignment:
Q  116 attttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccgga 169  Q
    ||||||| |||||||||||||||||||||||| ||| |||||| ||||||||||    
T  5376535 attttcttaaattattagcggtgtcggcgtgttagtgtccgtgtcgtgtccgga 5376588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 35 - 88
Target Start/End: Original strand, 48547938 - 48547991
Alignment:
Q  35 ctatgaagcacggacactcctcgaattagccatgtccgacaccgacaccacacc 88  Q
    ||||||||||||||||||||||||||||| | | |||||||||||||| |||||    
T  48547938 ctatgaagcacggacactcctcgaattaggcgtatccgacaccgacacgacacc 48547991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 36 - 182
Target Start/End: Original strand, 10572535 - 10572690
Alignment:
Q  36 tatgaagcacggacactcctcgaattagccatgtcc--------gacaccgacaccacaccgacacat--aattataatgaaatatagcgattttctcaa 125  Q
    |||||||||||||||||||| ||||||| | |||||        |||||| |||| ||||||||||||  ||||| |  ||| ||| | |||||||||||    
T  10572535 tatgaagcacggacactccttgaattaggcgtgtccacgtgcctgacaccaacacaacaccgacacatttaattacaccgaattat-gtgattttctcaa 10572633  T
Q  126 attattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagaccgtattcgtg 182  Q
    |||||||| ||||||||||||||||| | | || ||||||||| | |||||| ||||    
T  10572634 attattagtggtgtcggcgtgtcagtgttcatgtcgtgtccggtgtccgtatccgtg 10572690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 115 - 159
Target Start/End: Original strand, 12443494 - 12443538
Alignment:
Q  115 gattttctcaaattattagcggtgtcggcgtgtcagtatccgtgc 159  Q
    |||||||||||||||||||| ||||||||||||| ||||||||||    
T  12443494 gattttctcaaattattagctgtgtcggcgtgtccgtatccgtgc 12443538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 115 - 151
Target Start/End: Original strand, 17831565 - 17831601
Alignment:
Q  115 gattttctcaaattattagcggtgtcggcgtgtcagt 151  Q
    |||||||||||||||||||||||||||||||||||||    
T  17831565 gattttctcaaattattagcggtgtcggcgtgtcagt 17831601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 115 - 151
Target Start/End: Complemental strand, 36878486 - 36878450
Alignment:
Q  115 gattttctcaaattattagcggtgtcggcgtgtcagt 151  Q
    |||||||||||||||||||||||||||||||||||||    
T  36878486 gattttctcaaattattagcggtgtcggcgtgtcagt 36878450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 76 - 168
Target Start/End: Original strand, 1486703 - 1486796
Alignment:
Q  76 ccgacaccacaccgacac--ataattataatgaaatatagcgattttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccgg 168  Q
    ||||||| ||||||||||  ||||||| | |||| ||| | |||||| ||||||||||||| ||||| ||||||||||||||||| ||| |||||    
T  1486703 ccgacacgacaccgacacttataattacactgaattat-gtgattttttcaaattattagctgtgtcagcgtgtcagtatccgtgtcgtatccgg 1486796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 115 - 190
Target Start/End: Original strand, 5927374 - 5927449
Alignment:
Q  115 gattttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagaccgtattcgtgcttcatag 190  Q
    |||||| ||||||||||||| ||||  |||||||||| |||||| ||||||||| | |||||| ||||||| ||||    
T  5927374 gattttttcaaattattagcagtgttagcgtgtcagtgtccgtgtcgtgtccggtgtccgtatccgtgcttaatag 5927449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 33 - 136
Target Start/End: Complemental strand, 44482343 - 44482234
Alignment:
Q  33 aactatgaagcacggacactcctcgaattagc-----catgtccgacaccgacaccacaccgacac--ataattataatgaaatatagcgattttctcaa 125  Q
    ||||||| ||||||||||||||||| ||||||     | |||||||||||||||| ||||||||||  ||||||| | |||| ||| | |||||||||||    
T  44482343 aactatggagcacggacactcctcggattagctgtgtcgtgtccgacaccgacacgacaccgacacatataattacactgaattat-gtgattttctcaa 44482245  T
Q  126 attattagcgg 136  Q
    ||||| |||||    
T  44482244 attataagcgg 44482234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 90 - 168
Target Start/End: Complemental strand, 1262933 - 1262856
Alignment:
Q  90 acacataattataatgaaatatagcgattttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccgg 168  Q
    |||| |||||||| |||| ||| | |||||||||||||||||||| ||||||||||||| || | |||| |||||||||    
T  1262933 acacttaattatattgaattat-gtgattttctcaaattattagctgtgtcggcgtgtccgtgttcgtgtcgtgtccgg 1262856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 115 - 165
Target Start/End: Complemental strand, 9709845 - 9709795
Alignment:
Q  115 gattttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtc 165  Q
    ||||||||||||||||||||||||| ||| ||||||| |||||| ||||||    
T  9709845 gattttctcaaattattagcggtgtaggcatgtcagtgtccgtgtcgtgtc 9709795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 115 - 165
Target Start/End: Complemental strand, 34298461 - 34298411
Alignment:
Q  115 gattttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtc 165  Q
    ||||||||||||||||||| |||||||| |||||||| |||||| ||||||    
T  34298461 gattttctcaaattattagtggtgtcggtgtgtcagtttccgtgtcgtgtc 34298411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 75 - 158
Target Start/End: Complemental strand, 38503386 - 38503302
Alignment:
Q  75 accgacaccacaccgacacata--attataatgaaatatagcgattttctcaaattattagcggtgtcggcgtgtcagtatccgtg 158  Q
    |||||||  |||||||||||||  |||| | |||||||||  |||||||||||||||||||||||||||| |||| ||| ||||||    
T  38503386 accgacaggacaccgacacatataattacactgaaatatat-gattttctcaaattattagcggtgtcggtgtgttagtgtccgtg 38503302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 115 - 151
Target Start/End: Original strand, 19562655 - 19562691
Alignment:
Q  115 gattttctcaaattattagcggtgtcggcgtgtcagt 151  Q
    |||||||||||||||||||| ||||||||||||||||    
T  19562655 gattttctcaaattattagcagtgtcggcgtgtcagt 19562691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 116 - 151
Target Start/End: Original strand, 609493 - 609528
Alignment:
Q  116 attttctcaaattattagcggtgtcggcgtgtcagt 151  Q
    |||||||||||||||||| |||||||||||||||||    
T  609493 attttctcaaattattagtggtgtcggcgtgtcagt 609528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 115 - 158
Target Start/End: Original strand, 6415035 - 6415078
Alignment:
Q  115 gattttctcaaattattagcggtgtcggcgtgtcagtatccgtg 158  Q
    ||||||||||||| ||||||| ||||||||||||||| ||||||    
T  6415035 gattttctcaaataattagcgatgtcggcgtgtcagtgtccgtg 6415078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 115 - 158
Target Start/End: Original strand, 46348417 - 46348460
Alignment:
Q  115 gattttctcaaattattagcggtgtcggcgtgtcagtatccgtg 158  Q
    |||||| ||||||||||||| |||||||||||||||| ||||||    
T  46348417 gattttttcaaattattagctgtgtcggcgtgtcagtgtccgtg 46348460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 122 - 177
Target Start/End: Original strand, 48040503 - 48040558
Alignment:
Q  122 tcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagaccgtat 177  Q
    ||||||||||| | |||||||||||||||| |||||| ||||||||| | ||||||    
T  48040503 tcaaattattatctgtgtcggcgtgtcagtgtccgtgtcgtgtccggtgtccgtat 48040558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 116 - 167
Target Start/End: Original strand, 48450622 - 48450673
Alignment:
Q  116 attttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccg 167  Q
    ||||| ||||||||||||| |||| ||||||||||| |||||| ||||||||    
T  48450622 attttttcaaattattagctgtgttggcgtgtcagtgtccgtgtcgtgtccg 48450673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 117 - 151
Target Start/End: Original strand, 3490426 - 3490460
Alignment:
Q  117 ttttctcaaattattagcggtgtcggcgtgtcagt 151  Q
    |||||||||||||||||| ||||||||||||||||    
T  3490426 ttttctcaaattattagcagtgtcggcgtgtcagt 3490460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 115 - 149
Target Start/End: Original strand, 10475011 - 10475045
Alignment:
Q  115 gattttctcaaattattagcggtgtcggcgtgtca 149  Q
    ||||||||||| |||||||||||||||||||||||    
T  10475011 gattttctcaagttattagcggtgtcggcgtgtca 10475045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 116 - 190
Target Start/End: Original strand, 39130802 - 39130876
Alignment:
Q  116 attttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagaccgtattcgtgcttcatag 190  Q
    ||||||| |||||||||   ||||| |||||||| ||||| || ||||||||| | |||||| ||||||||||||    
T  39130802 attttctaaaattattaatagtgtcagcgtgtcaatatccatgtcgtgtccggtgtccgtatccgtgcttcatag 39130876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 113 - 151
Target Start/End: Original strand, 40285686 - 40285724
Alignment:
Q  113 gcgattttctcaaattattagcggtgtcggcgtgtcagt 151  Q
    ||||||||||||||||||||||||||| || ||||||||    
T  40285686 gcgattttctcaaattattagcggtgttggtgtgtcagt 40285724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 115 - 168
Target Start/End: Original strand, 20157384 - 20157437
Alignment:
Q  115 gattttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccgg 168  Q
    |||||||||| ||||||||||||||||  ||||||||  ||||| |||||||||    
T  20157384 gattttctcacattattagcggtgtcgatgtgtcagtgcccgtgtcgtgtccgg 20157437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 115 - 148
Target Start/End: Complemental strand, 21530714 - 21530681
Alignment:
Q  115 gattttctcaaattattagcggtgtcggcgtgtc 148  Q
    |||||||||||||||||| |||||||||||||||    
T  21530714 gattttctcaaattattaacggtgtcggcgtgtc 21530681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 67 - 145
Target Start/End: Complemental strand, 25361960 - 25361881
Alignment:
Q  67 tgtccgacaccgacaccacaccgacacata--attataatgaaatatagcgattttctcaaattattagcggtgtcggcgt 145  Q
    |||||||||||||||| |||| ||||||||  |||| | |||| ||| | |||||||||||||||| || |||||||||||    
T  25361960 tgtccgacaccgacacgacactgacacatataattacactgaattat-gtgattttctcaaattatcagtggtgtcggcgt 25361881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 116 - 145
Target Start/End: Original strand, 41877505 - 41877534
Alignment:
Q  116 attttctcaaattattagcggtgtcggcgt 145  Q
    ||||||||||||||||||||||||||||||    
T  41877505 attttctcaaattattagcggtgtcggcgt 41877534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 67 - 148
Target Start/End: Complemental strand, 9828118 - 9828036
Alignment:
Q  67 tgtccgacaccgacaccacaccgacacataa--ttataatgaaatatagcgattttctcaaattattagcggtgtcggcgtgtc 148  Q
    |||| ||||| ||||| ||||||||||||||  ||| | |||| ||| | |||||| |||||||||||| ||||||||||||||    
T  9828118 tgtctgacacggacacgacaccgacacataaaattacactgaattat-gtgattttatcaaattattagtggtgtcggcgtgtc 9828036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 115 - 167
Target Start/End: Original strand, 15641064 - 15641116
Alignment:
Q  115 gattttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccg 167  Q
    |||||||| ||||||||||| |||||||| ||||||| |||||| | ||||||    
T  15641064 gattttcttaaattattagcagtgtcggcatgtcagtgtccgtgtcatgtccg 15641116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 122 - 158
Target Start/End: Original strand, 18556497 - 18556533
Alignment:
Q  122 tcaaattattagcggtgtcggcgtgtcagtatccgtg 158  Q
    ||||||||||||| |||||||||||||||| ||||||    
T  18556497 tcaaattattagctgtgtcggcgtgtcagtgtccgtg 18556533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 84 - 148
Target Start/End: Original strand, 25452152 - 25452215
Alignment:
Q  84 acaccgacacataattataatgaaatatagcgattttctcaaattattagcggtgtcggcgtgtc 148  Q
    ||||||||||||||||| | |||| ||| | |||||||||||||||||||| |||| ||| ||||    
T  25452152 acaccgacacataattacactgaattat-gagattttctcaaattattagcagtgttggcatgtc 25452215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 44; Significance: 5e-16; HSPs: 31)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 79 - 190
Target Start/End: Original strand, 21782817 - 21782927
Alignment:
Q  79 acaccacaccgacacataattataatgaaatatagcgattttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagaccgtatt 178  Q
    |||| |||||| |||||||||| | |||| ||| | |||||||||||||||||||| |||||||||||||||| |  ||| ||||||| | | | |||||    
T  21782817 acacgacaccggcacataattacactgaattat-gtgattttctcaaattattagcagtgtcggcgtgtcagtgtttgtgtcgtgtccagtgtctgtatt 21782915  T
Q  179 cgtgcttcatag 190  Q
    ||||||||||||    
T  21782916 cgtgcttcatag 21782927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 126 - 190
Target Start/End: Complemental strand, 33519800 - 33519736
Alignment:
Q  126 attattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagaccgtattcgtgcttcatag 190  Q
    ||||||||||||||||| ||||||||||||| | ||||||||| | |||||| ||||||||||||    
T  33519800 attattagcggtgtcggtgtgtcagtatccgcgtcgtgtccggtgtccgtatccgtgcttcatag 33519736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 115 - 190
Target Start/End: Original strand, 20539708 - 20539783
Alignment:
Q  115 gattttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagaccgtattcgtgcttcatag 190  Q
    |||||| ||||||||||||| |||||| ||||||||| |||||| ||||||| | | |||||| ||||||||||||    
T  20539708 gattttttcaaattattagctgtgtcgacgtgtcagtgtccgtgtcgtgtccagtgtccgtatccgtgcttcatag 20539783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 115 - 165
Target Start/End: Complemental strand, 21616787 - 21616737
Alignment:
Q  115 gattttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtc 165  Q
    |||||||||||||||||||||||||||||||||| || |||||| ||||||    
T  21616787 gattttctcaaattattagcggtgtcggcgtgtccgtgtccgtgtcgtgtc 21616737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 84 - 168
Target Start/End: Complemental strand, 4332981 - 4332898
Alignment:
Q  84 acaccgacacataattataatgaaatatagcgattttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccgg 168  Q
    ||||||||||||||||| | |||| ||| | ||||||| |||||||||| | |||||||| ||| |||||| |||||||||||||    
T  4332981 acaccgacacataattacattgaattat-gtgattttcccaaattattatcagtgtcggcatgtaagtatctgtgccgtgtccgg 4332898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 84 - 142
Target Start/End: Complemental strand, 1328033 - 1327976
Alignment:
Q  84 acaccgacacataattataatgaaatatagcgattttctcaaattattagcggtgtcgg 142  Q
    ||||||||||||||||||| |||| | ||  ||||||||||||||||||||||||||||    
T  1328033 acaccgacacataattatactgaattttat-gattttctcaaattattagcggtgtcgg 1327976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 67 - 165
Target Start/End: Original strand, 36409614 - 36409711
Alignment:
Q  67 tgtccgacaccgacaccacaccgacacataattataatgaaatatagcgattttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtc 165  Q
    |||| |||||| |||  ||||||||||||||||| | | || ||| | |||||| ||||||||| |||||||||||| ||| |||||||||| ||||||    
T  36409614 tgtcagacaccaacatgacaccgacacataattacactaaattat-gtgattttttcaaattatcagcggtgtcggcatgtgagtatccgtgtcgtgtc 36409711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 117 - 190
Target Start/End: Original strand, 19536434 - 19536507
Alignment:
Q  117 ttttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagaccgtattcgtgcttcatag 190  Q
    |||| ||||||||||||  |||||||||||||| | |||||| ||||||||| | ||||||  |||||||||||    
T  19536434 ttttttcaaattattagttgtgtcggcgtgtcattgtccgtgtcgtgtccggtgtccgtatctgtgcttcatag 19536507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 118 - 167
Target Start/End: Complemental strand, 23718048 - 23717999
Alignment:
Q  118 tttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccg 167  Q
    ||||||||||||||||||||||||| |||||||| |||||| | ||||||    
T  23718048 tttctcaaattattagcggtgtcggtgtgtcagtgtccgtgtcatgtccg 23717999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 118 - 167
Target Start/End: Complemental strand, 24105720 - 24105671
Alignment:
Q  118 tttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccg 167  Q
    ||||||||||||||||||||||||| |||||||| |||||| | ||||||    
T  24105720 tttctcaaattattagcggtgtcggtgtgtcagtgtccgtgtcatgtccg 24105671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 35 - 148
Target Start/End: Complemental strand, 19574078 - 19573970
Alignment:
Q  35 ctatgaagcacggacactcctcgaattagccatgtccgacaccgacaccacaccgacacataattataatgaaatatagcgattttctcaaattattagc 134  Q
    |||||||||| ||||||||||||||||||   ||||||||||||||||  ||||     ||||||| | |||| ||| |  ||||||| ||||||||| |    
T  19574078 ctatgaagcatggacactcctcgaattaggtgtgtccgacaccgacacgccacc----tataattacactgaattat-gttattttcttaaattattatc 19573984  T
Q  135 ggtgtcggcgtgtc 148  Q
    ||||||||||||||    
T  19573983 ggtgtcggcgtgtc 19573970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 67 - 140
Target Start/End: Complemental strand, 44860394 - 44860320
Alignment:
Q  67 tgtccgacaccgacaccacaccgacacata--attataatgaaatatagcgattttctcaaattattagcggtgtc 140  Q
    ||||| ||||| |||| |||||||||||||  |||| | |||| ||| ||||||||||||||||||||||||||||    
T  44860394 tgtccaacaccaacacgacaccgacacatataattacactgaattat-gcgattttctcaaattattagcggtgtc 44860320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 65 - 153
Target Start/End: Original strand, 18420417 - 18420506
Alignment:
Q  65 catgtccgacaccgacaccacaccgacac--ataattataatgaaatatagcgattttctcaaattattagcggtgtcggcgtgtcagtat 153  Q
    |||||||||||  ||||| ||||||||||  ||||||  | |||| ||| | |||||||||||||||||||| |||| |||||||||||||    
T  18420417 catgtccgacatggacacaacaccgacacttataattgcattgaattat-gtgattttctcaaattattagcagtgttggcgtgtcagtat 18420506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 35 - 82
Target Start/End: Original strand, 19536361 - 19536408
Alignment:
Q  35 ctatgaagcacggacactcctcgaattagccatgtccgacaccgacac 82  Q
    |||||||||| |||||||||||| ||||| | ||||||||||||||||    
T  19536361 ctatgaagcatggacactcctcggattaggcgtgtccgacaccgacac 19536408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 115 - 150
Target Start/End: Original strand, 37411278 - 37411313
Alignment:
Q  115 gattttctcaaattattagcggtgtcggcgtgtcag 150  Q
    ||||||||||||||||||||||||||||| ||||||    
T  37411278 gattttctcaaattattagcggtgtcggcatgtcag 37411313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 36 - 82
Target Start/End: Original strand, 18255945 - 18255991
Alignment:
Q  36 tatgaagcacggacactcctcgaattagccatgtccgacaccgacac 82  Q
    |||||||||||||||||||| | ||||| | ||||||||||||||||    
T  18255945 tatgaagcacggacactccttggattaggcgtgtccgacaccgacac 18255991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 90 - 168
Target Start/End: Complemental strand, 18276570 - 18276493
Alignment:
Q  90 acacataattataatgaaatatagcgattttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccgg 168  Q
    ||||||||||| | |||| || || ||||||||||||||||||||||||||||| | ||||| || ||  |||||||||    
T  18276570 acacataattacactgaatta-agtgattttctcaaattattagcggtgtcggcatatcagtgtctgtatcgtgtccgg 18276493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 36 - 82
Target Start/End: Original strand, 34691770 - 34691816
Alignment:
Q  36 tatgaagcacggacactcctcgaattagccatgtccgacaccgacac 82  Q
    |||||| ||||||||||||||| ||||| | ||||||||||||||||    
T  34691770 tatgaaacacggacactcctcggattaggcgtgtccgacaccgacac 34691816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 36 - 82
Target Start/End: Original strand, 34714182 - 34714228
Alignment:
Q  36 tatgaagcacggacactcctcgaattagccatgtccgacaccgacac 82  Q
    |||||| ||||||||||||||| ||||| | ||||||||||||||||    
T  34714182 tatgaaacacggacactcctcggattaggcgtgtccgacaccgacac 34714228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 116 - 157
Target Start/End: Complemental strand, 21091747 - 21091706
Alignment:
Q  116 attttctcaaattattagcggtgtcggcgtgtcagtatccgt 157  Q
    ||||||| ||||||||||||||||||| |||||||| |||||    
T  21091747 attttcttaaattattagcggtgtcggtgtgtcagtgtccgt 21091706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 124 - 189
Target Start/End: Complemental strand, 21624282 - 21624217
Alignment:
Q  124 aaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagaccgtattcgtgcttcata 189  Q
    ||||||||||| |||||||||||||||| || ||| ||||| ||| | |||||| || ||||||||    
T  21624282 aaattattagctgtgtcggcgtgtcagtgtctgtgtcgtgttcggtgtccgtatccgggcttcata 21624217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 115 - 168
Target Start/End: Complemental strand, 31018615 - 31018562
Alignment:
Q  115 gattttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccgg 168  Q
    |||||||| |||||||||||||||| ||||||||||| ||| || ||| |||||    
T  31018615 gattttctgaaattattagcggtgttggcgtgtcagtgtccatgtcgtatccgg 31018562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 115 - 151
Target Start/End: Complemental strand, 896236 - 896200
Alignment:
Q  115 gattttctcaaattattagcggtgtcggcgtgtcagt 151  Q
    |||||||||||| ||||||| ||||||||||||||||    
T  896236 gattttctcaaactattagcagtgtcggcgtgtcagt 896200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 70 - 158
Target Start/End: Complemental strand, 2331863 - 2331776
Alignment:
Q  70 ccgacaccgacaccacaccgacacataattataatgaaatatagcgattttctcaaattattagcggtgtcggcgtgtcagtatccgtg 158  Q
    ||||||| ||||| |||||||||||||| || | |||| ||| | ||||||||||||||||||  |||||  |||||||| | ||||||    
T  2331863 ccgacactgacacgacaccgacacataaatacactgaattat-gtgattttctcaaattattaatggtgtttgcgtgtcaatgtccgtg 2331776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 116 - 164
Target Start/End: Original strand, 10535794 - 10535842
Alignment:
Q  116 attttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgt 164  Q
    ||||||||||||||||| |||||||||||| | |||||| ||| |||||    
T  10535794 attttctcaaattattatcggtgtcggcgtattagtatctgtgtcgtgt 10535842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 85 - 165
Target Start/End: Complemental strand, 28412404 - 28412325
Alignment:
Q  85 caccgacacataattataatgaaatatagcgattttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtc 165  Q
    |||||||||||||||| | |||| ||| | |||||| ||||||||||| |||||| | ||||| ||| |||||| ||||||    
T  28412404 caccgacacataattacactgaattat-gtgattttatcaaattattaacggtgttgacgtgttagtgtccgtgtcgtgtc 28412325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 115 - 167
Target Start/End: Original strand, 30404884 - 30404936
Alignment:
Q  115 gattttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccg 167  Q
    |||||| ||||||||||| | |||||||||||||||| |||||| | ||||||    
T  30404884 gattttttcaaattattaaccgtgtcggcgtgtcagtgtccgtgtcatgtccg 30404936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 115 - 147
Target Start/End: Complemental strand, 31284073 - 31284041
Alignment:
Q  115 gattttctcaaattattagcggtgtcggcgtgt 147  Q
    |||||||||||||||||||| ||||||||||||    
T  31284073 gattttctcaaattattagcagtgtcggcgtgt 31284041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 115 - 151
Target Start/End: Original strand, 38117193 - 38117229
Alignment:
Q  115 gattttctcaaattattagcggtgtcggcgtgtcagt 151  Q
    |||||| ||||||||||||| ||||||||||||||||    
T  38117193 gattttttcaaattattagctgtgtcggcgtgtcagt 38117229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 35 - 71
Target Start/End: Original strand, 42511322 - 42511358
Alignment:
Q  35 ctatgaagcacggacactcctcgaattagccatgtcc 71  Q
    ||||||||||||||||||||||| ||||||| |||||    
T  42511322 ctatgaagcacggacactcctcggattagccgtgtcc 42511358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 116 - 148
Target Start/End: Original strand, 42832311 - 42832343
Alignment:
Q  116 attttctcaaattattagcggtgtcggcgtgtc 148  Q
    ||||||||||||||||||||||||||| |||||    
T  42832311 attttctcaaattattagcggtgtcggtgtgtc 42832343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0306 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0306
Description:

Target: scaffold0306; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 115 - 191
Target Start/End: Complemental strand, 13425 - 13349
Alignment:
Q  115 gattttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagaccgtattcgtgcttcatagt 191  Q
    |||||||||||||||||||  |||||||||||||||| |||||| | | ||||| | |||||| |||||||||||||    
T  13425 gattttctcaaattattagttgtgtcggcgtgtcagtgtccgtgtcatctccggtgtccgtatccgtgcttcatagt 13349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0223 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0223
Description:

Target: scaffold0223; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 35 - 190
Target Start/End: Complemental strand, 20279 - 20122
Alignment:
Q  35 ctatgaagcacggac---actcctcgaattagccatgtccgacaccgacaccacaccgacacat--aattataatgaaatatagcgattttctcaaatta 129  Q
    |||||||||||||||   |||||||| ||||| | |||||  ||||||||| |||| ||||| |  ||||| | |||| ||| | |||||| ||||||||    
T  20279 ctatgaagcacggactgtactcctcggattaggcgtgtcc--caccgacacgacactgacacttgtaattacactgaattat-gtgattttttcaaatta 20183  T
Q  130 ttagcggtgtcggcgtgtcagtatccgtgccgtgtccggagaccgtattcgtgcttcatag 190  Q
    ||||| |||||||||||||| | |||||| ||||||||| | ||||||  |||||||||||    
T  20182 ttagctgtgtcggcgtgtcattgtccgtgtcgtgtccggtgtccgtatctgtgcttcatag 20122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0152 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0152
Description:

Target: scaffold0152; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 115 - 191
Target Start/End: Original strand, 21902 - 21978
Alignment:
Q  115 gattttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagaccgtattcgtgcttcatagt 191  Q
    |||||||||||||||||||  |||||||||||||||| |||||| | | ||||| | |||||| |||||||||||||    
T  21902 gattttctcaaattattagttgtgtcggcgtgtcagtgtccgtgtcatctccggtgtccgtatccgtgcttcatagt 21978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 36)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 65 - 154
Target Start/End: Original strand, 8039818 - 8039908
Alignment:
Q  65 catgtccgacaccgacaccacaccgacacata--attataatgaaatatagcgattttctcaaattattagcggtgtcggcgtgtcagtatc 154  Q
    |||||||||||||||||| |||||||||||||  |||| | |||| ||||   |||||||||||||||||||||||| ||||||||| ||||    
T  8039818 catgtccgacaccgacacgacaccgacacatataattacactgaattatata-attttctcaaattattagcggtgttggcgtgtcaatatc 8039908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 78 - 169
Target Start/End: Original strand, 5441029 - 5441119
Alignment:
Q  78 gacaccacaccgacacataattataatgaaatatagcgattttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccgga 169  Q
    ||||| ||||||||||||||||  | |||| ||| | |||||||||||||| ||||||||| |||||||||||| || ||| ||||||||||    
T  5441029 gacacaacaccgacacataattccattgaattat-gtgattttctcaaatttttagcggtgacggcgtgtcagtgtctgtgtcgtgtccgga 5441119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 115 - 166
Target Start/End: Complemental strand, 8383282 - 8383231
Alignment:
Q  115 gattttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtcc 166  Q
    ||||||||||||||||||||||||||||||||||| | |||||| |||||||    
T  8383282 gattttctcaaattattagcggtgtcggcgtgtcaatgtccgtgtcgtgtcc 8383231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 94 - 159
Target Start/End: Original strand, 5407261 - 5407325
Alignment:
Q  94 ataattataatgaaatatagcgattttctcaaattattagcggtgtcggcgtgtcagtatccgtgc 159  Q
    ||||||| |||||| ||| | |||||||||||||| ||||||||||||||||||| ||||||||||    
T  5407261 ataattacaatgaattat-gtgattttctcaaatttttagcggtgtcggcgtgtcggtatccgtgc 5407325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 116 - 168
Target Start/End: Original strand, 24205076 - 24205128
Alignment:
Q  116 attttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccgg 168  Q
    ||||||||||||||||| | |||||||||||||||| |||||| |||||||||    
T  24205076 attttctcaaattattatccgtgtcggcgtgtcagtgtccgtgtcgtgtccgg 24205128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 124 - 190
Target Start/End: Complemental strand, 8842346 - 8842280
Alignment:
Q  124 aaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagaccgtattcgtgcttcatag 190  Q
    |||||||||||||||||||| ||||| | |||||| ||| ||||| | |||||| ||||||||||||    
T  8842346 aaattattagcggtgtcggcatgtcaatttccgtgtcgtatccggtgtccgtatccgtgcttcatag 8842280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 116 - 166
Target Start/End: Complemental strand, 9800064 - 9800014
Alignment:
Q  116 attttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtcc 166  Q
    |||||||||||||||||| ||||||||||||||||| | |||| |||||||    
T  9800064 attttctcaaattattagaggtgtcggcgtgtcagtgtacgtgtcgtgtcc 9800014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 67 - 168
Target Start/End: Complemental strand, 25064981 - 25064881
Alignment:
Q  67 tgtccgacaccgacaccacaccgacacataattataatgaaatatagcgattttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtcc 166  Q
    ||||||||||| |||| | ||| ||||||||||| | | || ||| | |||||| |||||| ||||||||||||||||||||| | || ||| |||||||    
T  25064981 tgtccgacaccaacacgataccaacacataattacactaaattat-gtgattttttcaaatcattagcggtgtcggcgtgtcaatgtctgtgtcgtgtcc 25064883  T
Q  167 gg 168  Q
    ||    
T  25064882 gg 25064881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 115 - 168
Target Start/End: Complemental strand, 28918026 - 28917973
Alignment:
Q  115 gattttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccgg 168  Q
    |||||| |||||||||||||  ||||||||||||||| |||||| |||||||||    
T  28918026 gattttttcaaattattagctatgtcggcgtgtcagtttccgtgtcgtgtccgg 28917973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 115 - 167
Target Start/End: Original strand, 2620087 - 2620139
Alignment:
Q  115 gattttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccg 167  Q
    ||||||||||||| ||||| ||||||||||||||||| |||| | ||||||||    
T  2620087 gattttctcaaatgattagtggtgtcggcgtgtcagtgtccgagtcgtgtccg 2620139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 116 - 164
Target Start/End: Original strand, 4991002 - 4991050
Alignment:
Q  116 attttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgt 164  Q
    ||||||||||| ||||||||||||||| |||||||| |||||| |||||    
T  4991002 attttctcaaactattagcggtgtcggagtgtcagtctccgtgtcgtgt 4991050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 115 - 167
Target Start/End: Original strand, 26492239 - 26492291
Alignment:
Q  115 gattttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccg 167  Q
    |||||| |||||||||||||  ||||||||||||||| |||||| ||||||||    
T  26492239 gattttttcaaattattagctctgtcggcgtgtcagtgtccgtgtcgtgtccg 26492291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 122 - 181
Target Start/End: Original strand, 10335327 - 10335386
Alignment:
Q  122 tcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagaccgtattcgt 181  Q
    ||||||||||||  |||||||||||||||| |||||| ||||||||| | |||| |||||    
T  10335327 tcaaattattagttgtgtcggcgtgtcagtgtccgtgtcgtgtccggtgtccgtgttcgt 10335386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 119 - 158
Target Start/End: Complemental strand, 21720785 - 21720746
Alignment:
Q  119 ttctcaaattattagcggtgtcggcgtgtcagtatccgtg 158  Q
    |||||||||||||| |||||||||||||||||| ||||||    
T  21720785 ttctcaaattattatcggtgtcggcgtgtcagtgtccgtg 21720746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 115 - 190
Target Start/End: Complemental strand, 55401100 - 55401025
Alignment:
Q  115 gattttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagaccgtattcgtgcttcatag 190  Q
    |||||| ||||||||||||  |||||||||| ||||| |||||| ||| ||||| | ||||||  |||||||||||    
T  55401100 gattttttcaaattattagttgtgtcggcgtatcagtgtccgtgtcgtatccggtgtccgtatctgtgcttcatag 55401025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 33 - 71
Target Start/End: Original strand, 4466538 - 4466576
Alignment:
Q  33 aactatgaagcacggacactcctcgaattagccatgtcc 71  Q
    |||||||||||||||||||||||||||| |||| |||||    
T  4466538 aactatgaagcacggacactcctcgaataagccgtgtcc 4466576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 33 - 63
Target Start/End: Original strand, 5440965 - 5440995
Alignment:
Q  33 aactatgaagcacggacactcctcgaattag 63  Q
    |||||||||||||||||||||||||||||||    
T  5440965 aactatgaagcacggacactcctcgaattag 5440995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 115 - 189
Target Start/End: Original strand, 8587055 - 8587129
Alignment:
Q  115 gattttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagaccgtattcgtgcttcata 189  Q
    |||||| |||||||| |||  |||||||||||||||| |||||| | ||||||| | ||||||  ||||||||||    
T  8587055 gattttttcaaattactagatgtgtcggcgtgtcagtgtccgtgtcatgtccggtgtccgtatctgtgcttcata 8587129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 115 - 165
Target Start/End: Original strand, 12674535 - 12674585
Alignment:
Q  115 gattttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtc 165  Q
    |||||||||||||||||||| ||||||| |||||| | |||||| ||||||    
T  12674535 gattttctcaaattattagcagtgtcggtgtgtcaatgtccgtgtcgtgtc 12674585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 33 - 71
Target Start/End: Complemental strand, 13807275 - 13807237
Alignment:
Q  33 aactatgaagcacggacactcctcgaattagccatgtcc 71  Q
    ||||||||| ||||||||||||||||||||| |||||||    
T  13807275 aactatgaaacacggacactcctcgaattaggcatgtcc 13807237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 115 - 189
Target Start/End: Original strand, 32429414 - 32429488
Alignment:
Q  115 gattttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagaccgtattcgtgcttcata 189  Q
    |||||||| |||||||||||| |||||| |||||| | | ||||  |||||||| | |||||| |||||||||||    
T  32429414 gattttcttaaattattagcgttgtcggagtgtcaatgttcgtgttgtgtccggtgtccgtatacgtgcttcata 32429488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 117 - 158
Target Start/End: Original strand, 3865592 - 3865633
Alignment:
Q  117 ttttctcaaattattagcggtgtcggcgtgtcagtatccgtg 158  Q
    |||| ||||||||||||| |||||||||||||||| ||||||    
T  3865592 ttttttcaaattattagctgtgtcggcgtgtcagtgtccgtg 3865633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 117 - 158
Target Start/End: Complemental strand, 12704030 - 12703989
Alignment:
Q  117 ttttctcaaattattagcggtgtcggcgtgtcagtatccgtg 158  Q
    ||||||||||||||||| ||||||||||||||  ||||||||    
T  12704030 ttttctcaaattattagtggtgtcggcgtgtccatatccgtg 12703989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 115 - 168
Target Start/End: Original strand, 15796328 - 15796381
Alignment:
Q  115 gattttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccgg 168  Q
    |||||| ||||||||||| | |||||||||||||| | |||||| |||||||||    
T  15796328 gattttttcaaattattaactgtgtcggcgtgtcattgtccgtgtcgtgtccgg 15796381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 94 - 147
Target Start/End: Original strand, 34307794 - 34307846
Alignment:
Q  94 ataattataatgaaatatagcgattttctcaaattattagcggtgtcggcgtgt 147  Q
    ||||||| | |||||||| | |||||||||||||||||||||||||| ||||||    
T  34307794 ataattacactgaaatat-gtgattttctcaaattattagcggtgtcagcgtgt 34307846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 125 - 189
Target Start/End: Complemental strand, 3631708 - 3631644
Alignment:
Q  125 aattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagaccgtattcgtgcttcata 189  Q
    |||||| || ||||||||||||| | | |||||| |||||| || |||||||| |||||||||||    
T  3631708 aattataagtggtgtcggcgtgttattgtccgtgtcgtgtcaggtgaccgtatccgtgcttcata 3631644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 115 - 151
Target Start/End: Original strand, 4987325 - 4987361
Alignment:
Q  115 gattttctcaaattattagcggtgtcggcgtgtcagt 151  Q
    |||||| ||||||||||||| ||||||||||||||||    
T  4987325 gattttttcaaattattagctgtgtcggcgtgtcagt 4987361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 115 - 151
Target Start/End: Original strand, 6525714 - 6525750
Alignment:
Q  115 gattttctcaaattattagcggtgtcggcgtgtcagt 151  Q
    ||||||||||||||||||||||||||| | |||||||    
T  6525714 gattttctcaaattattagcggtgtcgacatgtcagt 6525750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 122 - 158
Target Start/End: Original strand, 10318075 - 10318111
Alignment:
Q  122 tcaaattattagcggtgtcggcgtgtcagtatccgtg 158  Q
    ||||||||||||| |||||||||||||||| ||||||    
T  10318075 tcaaattattagctgtgtcggcgtgtcagtgtccgtg 10318111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 115 - 159
Target Start/End: Complemental strand, 14832124 - 14832080
Alignment:
Q  115 gattttctcaaattattagcggtgtcggcgtgtcagtatccgtgc 159  Q
    |||||| ||||||||||||| || |||||||||| ||||||||||    
T  14832124 gattttttcaaattattagctgtatcggcgtgtccgtatccgtgc 14832080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 115 - 151
Target Start/End: Complemental strand, 21479143 - 21479107
Alignment:
Q  115 gattttctcaaattattagcggtgtcggcgtgtcagt 151  Q
    |||||| ||||||||||||| ||||||||||||||||    
T  21479143 gattttttcaaattattagctgtgtcggcgtgtcagt 21479107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 116 - 148
Target Start/End: Complemental strand, 25074813 - 25074781
Alignment:
Q  116 attttctcaaattattagcggtgtcggcgtgtc 148  Q
    ||||||||||||||||| |||||||||||||||    
T  25074813 attttctcaaattattatcggtgtcggcgtgtc 25074781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 115 - 151
Target Start/End: Complemental strand, 26290396 - 26290360
Alignment:
Q  115 gattttctcaaattattagcggtgtcggcgtgtcagt 151  Q
    ||||||||||||||||||  |||||||||||||||||    
T  26290396 gattttctcaaattattaatggtgtcggcgtgtcagt 26290360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 115 - 167
Target Start/End: Complemental strand, 26508135 - 26508083
Alignment:
Q  115 gattttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccg 167  Q
    |||||| ||||||||||||| ||||| ||||||||||||| ||  ||||||||    
T  26508135 gattttttcaaattattagctgtgtcagcgtgtcagtatctgtatcgtgtccg 26508083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 35 - 71
Target Start/End: Complemental strand, 27505370 - 27505334
Alignment:
Q  35 ctatgaagcacggacactcctcgaattagccatgtcc 71  Q
    ||||||||||||||||||||||| ||||| |||||||    
T  27505370 ctatgaagcacggacactcctcggattaggcatgtcc 27505334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 115 - 151
Target Start/End: Complemental strand, 40052357 - 40052321
Alignment:
Q  115 gattttctcaaattattagcggtgtcggcgtgtcagt 151  Q
    |||||| ||||||||||||| ||||||||||||||||    
T  40052357 gattttttcaaattattagctgtgtcggcgtgtcagt 40052321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0168 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: scaffold0168
Description:

Target: scaffold0168; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 35 - 165
Target Start/End: Complemental strand, 21149 - 21018
Alignment:
Q  35 ctatgaagcacggacactcctcgaattagccatgtccgacaccgacaccacaccgacac--ataattataatgaaatatagcgattttctcaaattatta 132  Q
    |||||||||||||| ||| |||| ||||| | |||| ||||||||||| | ||||||||  |||||||||  ||  ||| | ||||||||||||||||||    
T  21149 ctatgaagcacggatacttctcggattaggcgtgtctgacaccgacacgataccgacacatataattataccgacttat-gtgattttctcaaattatta 21051  T
Q  133 gcggtgtcggcgtgtcagtatccgtgccgtgtc 165  Q
     | ||||| || ||||||| |||||| ||||||    
T  21050 accgtgtcagcatgtcagtgtccgtgtcgtgtc 21018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0168; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 35 - 96
Target Start/End: Complemental strand, 21278 - 21217
Alignment:
Q  35 ctatgaagcacggacactcctcgaattagccatgtccgacaccgacaccacaccgacacata 96  Q
    |||||||||||||| |||||||| ||||| | |||| ||||||||||| | |||||||||||    
T  21278 ctatgaagcacggatactcctcggattaggcgtgtctgacaccgacacgataccgacacata 21217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0168; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 35 - 96
Target Start/End: Complemental strand, 21407 - 21346
Alignment:
Q  35 ctatgaagcacggacactcctcgaattagccatgtccgacaccgacaccacaccgacacata 96  Q
    ||||||||||| |||||| |||| ||||| | |||| ||||||||||| | |||||||||||    
T  21407 ctatgaagcacagacacttctcggattaggcgtgtctgacaccgacacgataccgacacata 21346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0053 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 115 - 168
Target Start/End: Complemental strand, 8823 - 8770
Alignment:
Q  115 gattttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccgg 168  Q
    |||||| ||||||||||||| |||||||||||||||| |||||| |||||||||    
T  8823 gattttttcaaattattagctgtgtcggcgtgtcagtgtccgtgtcgtgtccgg 8770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 116 - 157
Target Start/End: Complemental strand, 92831 - 92790
Alignment:
Q  116 attttctcaaattattagcggtgtcggcgtgtcagtatccgt 157  Q
    |||||||||||||||||||||||||||||||||||| |||||    
T  92831 attttctcaaattattagcggtgtcggcgtgtcagtgtccgt 92790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 65 - 150
Target Start/End: Complemental strand, 53256 - 53170
Alignment:
Q  65 catgtccgacaccgacaccacaccgacac--ataattataatgaaatatagcgattttctcaaattattagcggtgtcggcgtgtcag 150  Q
    ||||||||||||||||||  |||||||||  ||||||| | |||| ||| | ||||||||||||||||| ||||| ||||||||||||    
T  53256 catgtccgacaccgacacggcaccgacacttataattacactgaattat-gtgattttctcaaattattggcggtatcggcgtgtcag 53170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 116 - 168
Target Start/End: Original strand, 225303 - 225355
Alignment:
Q  116 attttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccgg 168  Q
    ||||||||||||||||| | |||||||||||||||| |||||| |||||||||    
T  225303 attttctcaaattattatctgtgtcggcgtgtcagtgtccgtgtcgtgtccgg 225355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 67 - 168
Target Start/End: Complemental strand, 241668 - 241566
Alignment:
Q  67 tgtccgacaccgacaccacaccgacac--ataattataatgaaatatagcgattttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgt 164  Q
    ||||||||||| |||| ||||||||||  ||||||| | | || ||| | ||||||  |||||||||||| |||||||||||||||| |||||| |||||    
T  241668 tgtccgacaccaacacgacaccgacactcataattacactaaattat-gtgatttttccaaattattagctgtgtcggcgtgtcagtgtccgtgtcgtgt 241570  T
Q  165 ccgg 168  Q
    ||||    
T  241569 ccgg 241566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 116 - 151
Target Start/End: Original strand, 35723420 - 35723455
Alignment:
Q  116 attttctcaaattattagcggtgtcggcgtgtcagt 151  Q
    ||||||||||||||||||||||||||||||||||||    
T  35723420 attttctcaaattattagcggtgtcggcgtgtcagt 35723455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 117 - 151
Target Start/End: Original strand, 17345451 - 17345485
Alignment:
Q  117 ttttctcaaattattagcggtgtcggcgtgtcagt 151  Q
    |||||||||||||||||||||||||||||||||||    
T  17345451 ttttctcaaattattagcggtgtcggcgtgtcagt 17345485  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 115 - 168
Target Start/End: Original strand, 23293020 - 23293073
Alignment:
Q  115 gattttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccgg 168  Q
    |||||| ||||||||||||| |||||||||||||| | |||||| |||||||||    
T  23293020 gattttttcaaattattagctgtgtcggcgtgtcattgtccgtgtcgtgtccgg 23293073  T

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Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 115 - 168
Target Start/End: Complemental strand, 36635349 - 36635296
Alignment:
Q  115 gattttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccgg 168  Q
    ||||||||||||||||||| ||||| ||||||||||| |||| | |||||||||    
T  36635349 gattttctcaaattattagtggtgttggcgtgtcagtgtccgagtcgtgtccgg 36635296  T

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Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 116 - 168
Target Start/End: Complemental strand, 847975 - 847923
Alignment:
Q  116 attttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccgg 168  Q
    |||||||||||||||||||||  ||||||||||||| || ||| |||||||||    
T  847975 attttctcaaattattagcggcatcggcgtgtcagtgtctgtgtcgtgtccgg 847923  T

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Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 116 - 158
Target Start/End: Complemental strand, 7012090 - 7012048
Alignment:
Q  116 attttctcaaattattagcggtgtcggcgtgtcagtatccgtg 158  Q
    ||||||||||||||||| ||||||||||||||| || ||||||    
T  7012090 attttctcaaattattatcggtgtcggcgtgtcggtgtccgtg 7012048  T

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Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 115 - 165
Target Start/End: Original strand, 20521883 - 20521933
Alignment:
Q  115 gattttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtc 165  Q
    |||||| ||||||||||| |||| ||||||||||||| |||||| ||||||    
T  20521883 gattttatcaaattattatcggtatcggcgtgtcagtgtccgtgtcgtgtc 20521933  T

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Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 35 - 158
Target Start/End: Complemental strand, 30299048 - 30298928
Alignment:
Q  35 ctatgaagcacggacactcctcgaattagccatgtccgacaccgacaccacaccgacacat--aattataatgaaatatagcgattttctcaaattatta 132  Q
    ||||||||||||||||||||||| ||||| | |||||     || ||| |||||||||| |  ||||| | |||| |||  |  |||| |||||||||||    
T  30299048 ctatgaagcacggacactcctcggattagacgtgtcc-----cggcacgacaccgacacttgtaattacactgaattatgtcatttttttcaaattatta 30298954  T
Q  133 gcggtgtcggcgtgtcagtatccgtg 158  Q
    || |||||||||||||||| ||||||    
T  30298953 gctgtgtcggcgtgtcagtgtccgtg 30298928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 35 - 158
Target Start/End: Complemental strand, 30327916 - 30327796
Alignment:
Q  35 ctatgaagcacggacactcctcgaattagccatgtccgacaccgacaccacaccgacacat--aattataatgaaatatagcgattttctcaaattatta 132  Q
    ||||||||||||||||||||||| ||||| | |||||     || ||| |||||||||| |  ||||| | |||| |||  |  |||| |||||||||||    
T  30327916 ctatgaagcacggacactcctcggattagacgtgtcc-----cggcacgacaccgacacttgtaattacactgaattatgtcatttttttcaaattatta 30327822  T
Q  133 gcggtgtcggcgtgtcagtatccgtg 158  Q
    || |||||||||||||||| ||||||    
T  30327821 gctgtgtcggcgtgtcagtgtccgtg 30327796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 67 - 138
Target Start/End: Original strand, 30982863 - 30982935
Alignment:
Q  67 tgtccgacaccgacaccacaccgacac--ataattataatgaaatatagcgattttctcaaattattagcggtg 138  Q
    |||| ||||||||||| ||||||||||  ||||||| | |||||||| | ||||||||||||| ||||||||||    
T  30982863 tgtctgacaccgacacgacaccgacacttataattacactgaaatat-gtgattttctcaaatcattagcggtg 30982935  T

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Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 115 - 149
Target Start/End: Complemental strand, 40613475 - 40613441
Alignment:
Q  115 gattttctcaaattattagcggtgtcggcgtgtca 149  Q
    |||||||||||| ||||||||||||||||||||||    
T  40613475 gattttctcaaaatattagcggtgtcggcgtgtca 40613441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 115 - 147
Target Start/End: Complemental strand, 1747237 - 1747205
Alignment:
Q  115 gattttctcaaattattagcggtgtcggcgtgt 147  Q
    ||||||||||| |||||||||||||||||||||    
T  1747237 gattttctcaatttattagcggtgtcggcgtgt 1747205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 115 - 158
Target Start/End: Complemental strand, 16184842 - 16184801
Alignment:
Q  115 gattttctcaaattattagcggtgtcggcgtgtcagtatccgtg 158  Q
    |||||||||||||||||||||  |||||||||||||| ||||||    
T  16184842 gattttctcaaattattagcg--gtcggcgtgtcagtgtccgtg 16184801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 35 - 79
Target Start/End: Original strand, 18844423 - 18844467
Alignment:
Q  35 ctatgaagcacggacactcctcgaattagccatgtccgacaccga 79  Q
    |||||||||||||||||| |||| ||||| | |||||||||||||    
T  18844423 ctatgaagcacggacacttctcggattaggcgtgtccgacaccga 18844467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 117 - 157
Target Start/End: Complemental strand, 20633508 - 20633468
Alignment:
Q  117 ttttctcaaattattagcggtgtcggcgtgtcagtatccgt 157  Q
    |||| |||||||||||||||||||| ||||||||| |||||    
T  20633508 ttttttcaaattattagcggtgtcgacgtgtcagtgtccgt 20633468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 116 - 168
Target Start/End: Complemental strand, 24343531 - 24343479
Alignment:
Q  116 attttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccgg 168  Q
    ||||||||||||||||| | ||||||||||||| |  |||||| |||||||||    
T  24343531 attttctcaaattattatccgtgtcggcgtgtcggcgtccgtgtcgtgtccgg 24343479  T

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Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 35 - 71
Target Start/End: Complemental strand, 28470484 - 28470448
Alignment:
Q  35 ctatgaagcacggacactcctcgaattagccatgtcc 71  Q
    ||||||||||||||||||||||| ||||| |||||||    
T  28470484 ctatgaagcacggacactcctcggattaggcatgtcc 28470448  T

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Target: scaffold0018 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 115 - 168
Target Start/End: Original strand, 178853 - 178906
Alignment:
Q  115 gattttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccgg 168  Q
    |||||| ||||||||||||  |||||||||||||||| |||||| |||||||||    
T  178853 gattttttcaaattattagttgtgtcggcgtgtcagtgtccgtgtcgtgtccgg 178906  T

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Target: scaffold0018; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 116 - 157
Target Start/End: Original strand, 192284 - 192325
Alignment:
Q  116 attttctcaaattattagcggtgtcggcgtgtcagtatccgt 157  Q
    ||||||||||||||||| |||||||||||||||||| |||||    
T  192284 attttctcaaattattaacggtgtcggcgtgtcagtgtccgt 192325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0103 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0103
Description:

Target: scaffold0103; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 115 - 158
Target Start/End: Complemental strand, 51836 - 51793
Alignment:
Q  115 gattttctcaaattattagcggtgtcggcgtgtcagtatccgtg 158  Q
    |||||| ||||||||||||| |||||||||||||||| ||||||    
T  51836 gattttttcaaattattagctgtgtcggcgtgtcagtgtccgtg 51793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0697 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0697
Description:

Target: scaffold0697; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 115 - 148
Target Start/End: Complemental strand, 1669 - 1636
Alignment:
Q  115 gattttctcaaattattagcggtgtcggcgtgtc 148  Q
    |||||||||||||||||| |||||||||||||||    
T  1669 gattttctcaaattattaacggtgtcggcgtgtc 1636  T

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Target: scaffold0652 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0652
Description:

Target: scaffold0652; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 115 - 164
Target Start/End: Original strand, 496 - 545
Alignment:
Q  115 gattttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgt 164  Q
    |||||| ||||||||||||| |||||||||| ||||| |||||| |||||    
T  496 gattttttcaaattattagcagtgtcggcgtatcagtgtccgtggcgtgt 545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0279 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0279
Description:

Target: scaffold0279; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 114 - 147
Target Start/End: Original strand, 17903 - 17936
Alignment:
Q  114 cgattttctcaaattattagcggtgtcggcgtgt 147  Q
    |||||||||||||||||||||||||| |||||||    
T  17903 cgattttctcaaattattagcggtgtaggcgtgt 17936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 78 - 160
Target Start/End: Complemental strand, 28913 - 28830
Alignment:
Q  78 gacaccacaccgacacata--attataatgaaatatagcgattttctcaaattattagcggtgtcggcgtgtcagtatccgtgcc 160  Q
    ||||| |||||||||||||  |||| | |||| ||| |||||||||| ||||||||| |||||||||||||| ||| | ||||||    
T  28913 gacacaacaccgacacatataattacattgaattat-gcgattttcttaaattattaacggtgtcggcgtgttagtgttcgtgcc 28830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0475 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0475
Description:

Target: scaffold0475; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 116 - 168
Target Start/End: Complemental strand, 3340 - 3288
Alignment:
Q  116 attttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccgg 168  Q
    ||||||| ||||| |||||  ||||| |||||||||||||||| |||||||||    
T  3340 attttctaaaattgttagcattgtcgacgtgtcagtatccgtgtcgtgtccgg 3288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0450 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0450
Description:

Target: scaffold0450; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 35 - 63
Target Start/End: Original strand, 8564 - 8592
Alignment:
Q  35 ctatgaagcacggacactcctcgaattag 63  Q
    |||||||||||||||||||||||||||||    
T  8564 ctatgaagcacggacactcctcgaattag 8592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 115 - 167
Target Start/End: Complemental strand, 46707 - 46655
Alignment:
Q  115 gattttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccg 167  Q
    |||||| ||||||||||| | |||||||||||||| | |||||| ||||||||    
T  46707 gattttttcaaattattaactgtgtcggcgtgtcattgtccgtgtcgtgtccg 46655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 33 - 81
Target Start/End: Complemental strand, 46778 - 46731
Alignment:
Q  33 aactatgaagcacggacactcctcgaattagccatgtccgacaccgaca 81  Q
    ||||||||||||||||||||||||| ||||| | ||| |||||||||||    
T  46778 aactatgaagcacggacactcctcggattaggcgtgt-cgacaccgaca 46731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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