View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11844_high_6 (Length: 304)
Name: NF11844_high_6
Description: NF11844
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11844_high_6 |
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Alignment Details
Target: chr2 (Bit Score: 277; Significance: 1e-155; HSPs: 8)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 3 - 291
Target Start/End: Original strand, 11119116 - 11119404
Alignment:
| Q |
3 |
ccaacaactcctgataaattagacaagaactactacaacaatcttcaaggtaaaaagggtttgcttcaaagtgaccaagaattgttctcaacaccgggtg |
102 |
Q |
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| T |
11119116 |
ccaacaactcccgataaattcgacaagaactactacaacaatcttcaaggtaaaaagggtttgcttcaaagtgaccaagaattgttctcaacaccgggtg |
11119215 |
T |
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| Q |
103 |
cagataccattagcattgtcaacaactttggaaacaaccaaaatgttttcttccagaactttataaattcaatgattaaaatgggtaatattggcgtgct |
202 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11119216 |
cagataccattagcattgtcaacaactttggaaacaaccaaaatgttttcttccagaactttataaattcaatgattaaaatgggtaatattggcgtgct |
11119315 |
T |
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| Q |
203 |
tactggaaagaaaggagaaattagaaagcagtgcaattttgttaacaagaaatcttctgaattggatcttgctagtgtggcctcagaat |
291 |
Q |
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| T |
11119316 |
tactggaaagaaaggagaaattagaaagcagtgcaattttgttaacaagaaatcttctgaattggatcttgctagtgtgacctcagaat |
11119404 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 3 - 286
Target Start/End: Original strand, 11111345 - 11111628
Alignment:
| Q |
3 |
ccaacaactcctgataaattagacaagaactactacaacaatcttcaaggtaaaaagggtttgcttcaaagtgaccaagaattgttctcaacaccgggtg |
102 |
Q |
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||||| |||||||||| ||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
11111345 |
ccaacgactcctgatacattggacaagaacttctacaacaatcttcaaggtaaaaagggtttgcttcaaagtgaccaagaattattctcaacaccgggtg |
11111444 |
T |
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| Q |
103 |
cagataccattagcattgtcaacaactttggaaacaaccaaaatgttttcttccagaactttataaattcaatgattaaaatgggtaatattggcgtgct |
202 |
Q |
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| T |
11111445 |
cagataccattagcattgtcaacagctttgcaaatagccaaaatgttttctttcagaactttataaattcaatgattaaaatgggtaatattgatgtgct |
11111544 |
T |
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| Q |
203 |
tactggaaagaaaggagaaattagaaagcagtgcaattttgttaacaagaaatcttctgaattggatcttgctagtgtggcctc |
286 |
Q |
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||| ||||||||||||||||||||||| || ||||||||| |||||||||||||||||||||||||||||| | ||||||||| |
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| T |
11111545 |
taccggaaagaaaggagaaattagaaaacaatgcaattttattaacaagaaatcttctgaattggatcttggcattgtggcctc |
11111628 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 3 - 274
Target Start/End: Complemental strand, 10793449 - 10793178
Alignment:
| Q |
3 |
ccaacaactcctgataaattagacaagaactactacaacaatcttcaaggtaaaaagggtttgcttcaaagtgaccaagaattgttctcaacaccgggtg |
102 |
Q |
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||||| |||||||||| ||| |||||||||| ||||||||||||||| | |||||||||||||||||||||||||||||||||||| |||||||| || |
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| T |
10793449 |
ccaactactcctgatacattggacaagaacttctacaacaatcttcaggttaaaaagggtttgcttcaaagtgaccaagaattgttttcaacaccaaatg |
10793350 |
T |
|
| Q |
103 |
cagataccattagcattgtcaacaactttggaaacaaccaaaatgttttcttccagaactttataaattcaatgattaaaatgggtaatattggcgtgct |
202 |
Q |
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||||||||| ||||||||| || ||||||| || ||||||| || |||||| ||| ||||| || ||||||||||||||||||||||||| ||||| |
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| T |
10793349 |
cagataccactagcattgttaataactttgccaataaccaaagtgctttctttgagagctttaagaaagcaatgattaaaatgggtaatattggtgtgct |
10793250 |
T |
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| Q |
203 |
tactggaaagaaaggagaaattagaaagcagtgcaattttgttaacaagaaatcttctgaattggatcttgc |
274 |
Q |
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| T |
10793249 |
taccggaaagaaaggagaaataaggaaacaatgcaattttgttaacaaaaaatcttctgagttagatcttgc |
10793178 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 3 - 248
Target Start/End: Original strand, 11156597 - 11156842
Alignment:
| Q |
3 |
ccaacaactcctgataaattagacaagaactactacaacaatcttcaaggtaaaaagggtttgcttcaaagtgaccaagaattgttctcaacaccgggtg |
102 |
Q |
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||||| |||||||||||||| ||||||||||| ||| ||||||||||| |||||||| ||||| |||||||| ||||| |||||||||||| | |||| |
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| T |
11156597 |
ccaacgactcctgataaatttgacaagaactattactccaatcttcaagtgaaaaagggcttgctccaaagtgatcaagagttgttctcaacatccggtg |
11156696 |
T |
|
| Q |
103 |
cagataccattagcattgtcaacaactttggaaacaaccaaaatgttttcttccagaactttataaattcaatgattaaaatgggtaatattggcgtgct |
202 |
Q |
| |
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||||||||||||||||||||||||| || | | | | ||||| | |||||| ||| ||||| | |||||||||||||||| |||||||| ||||| |
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| T |
11156697 |
cagataccattagcattgtcaacaaattcagcaccgatcaaaacgctttctttgagagctttaaggctgcaatgattaaaatgggcaatattggtgtgct |
11156796 |
T |
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| Q |
203 |
tactggaaagaaaggagaaattagaaagcagtgcaattttgttaac |
248 |
Q |
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|| || | ||||||||| |||||||| || ||||| ||||||||| |
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| T |
11156797 |
aacagggacgaaaggagagattagaaaacaatgcaactttgttaac |
11156842 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 3 - 247
Target Start/End: Original strand, 11137655 - 11137899
Alignment:
| Q |
3 |
ccaacaactcctgataaattagacaagaactactacaacaatcttcaaggtaaaaagggtttgcttcaaagtgaccaagaattgttctcaacaccgggtg |
102 |
Q |
| |
|
||||| |||||||||||||| ||||||||||||||| ||||||||| |||||||||||||||||||| ||||||||||| | ||||| ||| | |||| |
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| T |
11137655 |
ccaacgactcctgataaatttgacaagaactactactccaatcttcagggtaaaaagggtttgcttcagagtgaccaagagcttttctcgacatctggtg |
11137754 |
T |
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| Q |
103 |
cagataccattagcattgtcaacaactttggaaacaaccaaaatgttttcttccagaactttataaattcaatgattaaaatgggtaatattggcgtgct |
202 |
Q |
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| ||||||||||||||||||||||| || | || |||||| |||||| | | |||| | | ||||||||||||||||||||||| ||||| |
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| T |
11137755 |
ctgataccattagcattgtcaacaagttcagtgctgacaaaaatgctttctttgatagctttgaagccgccatgattaaaatgggtaatattggtgtgct |
11137854 |
T |
|
| Q |
203 |
tactggaaagaaaggagaaattagaaagcagtgcaattttgttaa |
247 |
Q |
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|| || || |||||||| |||||||| || |||||||||||||| |
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| T |
11137855 |
gaccgggaaaaaaggagagattagaaaacattgcaattttgttaa |
11137899 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 3 - 132
Target Start/End: Original strand, 11145960 - 11146089
Alignment:
| Q |
3 |
ccaacaactcctgataaattagacaagaactactacaacaatcttcaaggtaaaaagggtttgcttcaaagtgaccaagaattgttctcaacaccgggtg |
102 |
Q |
| |
|
||||| |||||||||||||| ||||||||||| ||| |||||||||| ||||| ||||||||||||||||| ||||| |||||||||||| | |||| |
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| T |
11145960 |
ccaactactcctgataaatttgacaagaactattactctaatcttcaagtgaaaaaaggtttgcttcaaagtgatcaagagttgttctcaacatctggtg |
11146059 |
T |
|
| Q |
103 |
cagataccattagcattgtcaacaactttg |
132 |
Q |
| |
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| T |
11146060 |
ctgataccattagcattgtcaacaactttg |
11146089 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 3 - 247
Target Start/End: Original strand, 11149929 - 11150173
Alignment:
| Q |
3 |
ccaacaactcctgataaattagacaagaactactacaacaatcttcaaggtaaaaagggtttgcttcaaagtgaccaagaattgttctcaacaccgggtg |
102 |
Q |
| |
|
||||| |||||||||||||| ||||||||||| ||| |||||||||| |||||||||||||| |||||||| ||||| |||||||||||| | ||| |
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| T |
11149929 |
ccaacgactcctgataaatttgacaagaactattactctaatcttcaagtgaaaaagggtttgctccaaagtgatcaagagttgttctcaacatctggtt |
11150028 |
T |
|
| Q |
103 |
cagataccattagcattgtcaacaactttggaaacaaccaaaatgttttcttccagaactttataaattcaatgattaaaatgggtaatattggcgtgct |
202 |
Q |
| |
|
||||||||||||||||||||||||| |||| || | | ||||| | ||| || ||| ||||| | | ||||| |||||||| |||||||| ||| | |
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| T |
11150029 |
cagataccattagcattgtcaacaaatttgcaaccgatcaaaaagctttttttgagagctttaaggctgctatgatcaaaatgggaaatattggtgtgtt |
11150128 |
T |
|
| Q |
203 |
tactggaaagaaaggagaaattagaaagcagtgcaattttgttaa |
247 |
Q |
| |
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||||| || ||||||| |||||||| || ||||| |||||||| |
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|
| T |
11150129 |
aactgggaaacaaggagagattagaaaacaatgcaactttgttaa |
11150173 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 55 - 113
Target Start/End: Complemental strand, 11183671 - 11183613
Alignment:
| Q |
55 |
aaaagggtttgcttcaaagtgaccaagaattgttctcaacaccgggtgcagataccatt |
113 |
Q |
| |
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||||||| ||| |||| ||||||||||||||||| || ||||| ||||| ||||||||| |
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| T |
11183671 |
aaaaggggttgtttcagagtgaccaagaattgttttccacacctggtgctgataccatt |
11183613 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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