View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11845_high_7 (Length: 443)
Name: NF11845_high_7
Description: NF11845
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11845_high_7 |
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Alignment Details
Target: chr7 (Bit Score: 404; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 14 - 425
Target Start/End: Original strand, 35317328 - 35317739
Alignment:
| Q |
14 |
agatgcatcttagcagcaagaagtctattcttcagaaaattcttttgtgggccagacccaccttctggattagacccatcaggaaaccgagtcaacccat |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35317328 |
agatgcatcttagcagcaagaagtctattcttcagaaaattcttttgtgggccagacccaccttctggattagacccatcaggaaaccgagtcaacccat |
35317427 |
T |
|
| Q |
114 |
ccggttcagctaggtctggtgttataccagttaactctgttggatatgaggttttcttgttgatgcttcagtttctgtacagtggacaagtttctattgt |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35317428 |
ccggttcagctaggtctggtgttataccagttaactctgttggatatgaggttttcttgttgatgcttcagtttctgtacagtggacaagtttctattgt |
35317527 |
T |
|
| Q |
214 |
tcctcagaaacatgaacctaggcctaattgtggtgaccgtggttgttggcatacacattgtacttcagccgttgatcttgctcttgatactcttgcagcc |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35317528 |
tcctcagaaacatgaacctaggcctaattgtggtgaccgtggttgttggcatacacattgtacttcagccgttgatcttgctcttgatactcttgcagcc |
35317627 |
T |
|
| Q |
314 |
gctagatactttggagttgaacagcttgcattactcactcaggtttttattattgtttttgccattaataagtgtagtagagaagagtaaactatcagca |
413 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35317628 |
gctagatactttggagttgaacagcttgcattactcactcaggtttttattattgtttttgccattaataagtgtagtagagaagagtaaactatcagca |
35317727 |
T |
|
| Q |
414 |
tcagcatcatca |
425 |
Q |
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| T |
35317728 |
tcatcagcatca |
35317739 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 127; Significance: 2e-65; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 182 - 360
Target Start/End: Complemental strand, 19889814 - 19889636
Alignment:
| Q |
182 |
cagtttctgtacagtggacaagtttctattgttcctcagaaacatgaacctaggcctaattgtggtgaccgtggttgttggcatacacattgtacttcag |
281 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| | || || |||||||| |||||||| |||| |
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| T |
19889814 |
cagtttctgtacagtggacaagtttctattgttcctcagaaacatgagcctagacctaattgtggtgagagagggtgctggcatacgcattgtacctcag |
19889715 |
T |
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| Q |
282 |
ccgttgatcttgctcttgatactcttgcagccgctagatactttggagttgaacagcttgcattactcactcaggtttt |
360 |
Q |
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| T |
19889714 |
ccgttgatcttgcccttgatactctagctgccgctagatactttggagttgaacagcttgcattgctcactcaggtttt |
19889636 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 17 - 91
Target Start/End: Complemental strand, 19889979 - 19889905
Alignment:
| Q |
17 |
tgcatcttagcagcaagaagtctattcttcagaaaattcttttgtgggccagacccaccttctggattagaccca |
91 |
Q |
| |
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||||||||||||||||| ||||| |||||||| ||||||||||||||||| ||||||||||| ||| |||||||| |
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| T |
19889979 |
tgcatcttagcagcaaggagtcttttcttcaggaaattcttttgtgggcccgacccaccttcgggactagaccca |
19889905 |
T |
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