View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11845_low_1 (Length: 897)
Name: NF11845_low_1
Description: NF11845
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11845_low_1 |
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Alignment Details
Target: chr6 (Bit Score: 782; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 782; E-Value: 0
Query Start/End: Original strand, 19 - 879
Target Start/End: Complemental strand, 12123236 - 12122378
Alignment:
| Q |
19 |
taaatttttgtgtattattttcccttcattttgggatacttttgaggcacttttaagggaagaaacagttacataagcagctcaaaggaaacacatgaaa |
118 |
Q |
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| T |
12123236 |
taaatttttgtgtattattttcccttcattttgggatacttttgaggcacttttaagggaagaaacagttacataagcagctcaaaggaaacacatgaaa |
12123137 |
T |
|
| Q |
119 |
atcaagaattgctactagcatactacatagcatgcatgatatacatgtgtattgtattatccgggatgatgattttaatttgtcgaaaaacatggtcgat |
218 |
Q |
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| T |
12123136 |
atcaagaattgctactagcatactacatagcatgcatgatatacatgtgtattgtattatccgggatgatgattttaatttgtcgaaaaacatggtcgat |
12123037 |
T |
|
| Q |
219 |
acggttgaaattgcagttgtgttactattgcggaaaattcagaatcatttatattgcaaccgcggttgtagaccgcaatttaaatccatgtcaaggattt |
318 |
Q |
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| T |
12123036 |
acggttgaaattgcagttgtgttactattgcggaaaattcagaatcatttatattgcaactgcggttgtagaccgcaatttaaatccatgtcaaggattt |
12122937 |
T |
|
| Q |
319 |
atctccataaccagtagttgtagggctaattcgagaagttagagtattaggtaagaggcaaatactcacccaatagatttagtttatttctcaccaccat |
418 |
Q |
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||| |||| || |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
12122936 |
atccccatgactagtagttgtagggctaattcgagaagttcgagtattaggtaagaggcaaatactcacccaatagatttagtttatttttcaccaccat |
12122837 |
T |
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| Q |
419 |
gattaatcgaacgaaatacgcgtgttttaagtgatttatattaccaacattgtgtgaaacaaatggtagaggcttgaatcgtttcaccatttggttcaaa |
518 |
Q |
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| T |
12122836 |
gattaatcgaacgaaatacgc--gttttaagtgatttatattgccaacattgtgtgacacaaatggtagaggcttgaatcgtttcaccatttgattcaaa |
12122739 |
T |
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| Q |
519 |
gttcgatctttggtcgatccgcatggaaaaacatgcgttgggagtagtcagttctttaaatggatctcaattatctcgaagaattggcatttacatttgt |
618 |
Q |
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|||||||||||||||||| |||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12122738 |
gttcgatctttggtcgatacgcatggaaaaacatgtgttggaagtagtcagttctttaaatggatctcaattatctcgaagaattggcatttacatttgt |
12122639 |
T |
|
| Q |
619 |
acgtcagagatacctagtttaccaaccaaaaagttgattcatacttgtttgtactaagatgtattgtgtggtttagcttaaacttagagatgtacttgta |
718 |
Q |
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| T |
12122638 |
acgtcaaagatacctagtttaccaaccaaaaagttgattcatacttgtttgtactgagatgtattgtgtggtttagcttaaacttagagatgtacttgta |
12122539 |
T |
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| Q |
719 |
catgaaagtaaagagaaattggtgacaacttccgtgaattctgttacgtatatggtcctattgatactcaaatttattgtaatttgaaacttgtaagatt |
818 |
Q |
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| T |
12122538 |
catgaaagtaaagagaaattggtgacaacttccgtgaattctgttacgtatctggtcctattgatgctcaaatgtattgtaatttgaaacttgtaagatt |
12122439 |
T |
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| Q |
819 |
tttgtttggttagatatacaaagtgcatactattacattagacggacccggattctctgct |
879 |
Q |
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| T |
12122438 |
tttgtttggttagatatacaaagtgcatactattacattagacggacccggattctctgct |
12122378 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 574 - 603
Target Start/End: Original strand, 54618727 - 54618756
Alignment:
| Q |
574 |
ttaaatggatctcaattatctcgaagaatt |
603 |
Q |
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| T |
54618727 |
ttaaatggatctcaattatctcgaagaatt |
54618756 |
T |
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