View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11845_low_10 (Length: 258)
Name: NF11845_low_10
Description: NF11845
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11845_low_10 |
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| [»] scaffold0039 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 142; Significance: 1e-74; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 17 - 214
Target Start/End: Original strand, 4902643 - 4902843
Alignment:
| Q |
17 |
agagaatataatataaacaaaagagaaaa---aacacactaaagtatatgtttttaagtattggtttatttaattagattcaattattattactataaat |
113 |
Q |
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| T |
4902643 |
agagactataatataaacaaaagagaaaaaaaaacacactaaagtatatgtttttaagtattggtttatttaattagattcaattattattactataaat |
4902742 |
T |
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| Q |
114 |
ataaaatgttcgaattgaaaaaattgcaagtaatatgaatttgattgtataatttnnnnnnntatactacatctgtccctaattataagaccatttggag |
213 |
Q |
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| T |
4902743 |
ataaaatgttcgaattgaaaaaattgcaagtaatatgaatttgattgtataattttaaaaaatatattacctccgtctctaattataagaccattttgag |
4902842 |
T |
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| Q |
214 |
a |
214 |
Q |
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| T |
4902843 |
a |
4902843 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 178 - 215
Target Start/End: Original strand, 30182083 - 30182120
Alignment:
| Q |
178 |
tactacatctgtccctaattataagaccatttggagaa |
215 |
Q |
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| T |
30182083 |
tactacatctgtccctaattataaaaccattttgagaa |
30182120 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 178 - 215
Target Start/End: Original strand, 39180461 - 39180498
Alignment:
| Q |
178 |
tactacatctgtccctaattataagaccatttggagaa |
215 |
Q |
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| T |
39180461 |
tactacatccgtccctaattataagaccattttgagaa |
39180498 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0039 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0039
Description:
Target: scaffold0039; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 177 - 215
Target Start/End: Original strand, 93784 - 93822
Alignment:
| Q |
177 |
atactacatctgtccctaattataagaccatttggagaa |
215 |
Q |
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| T |
93784 |
atactacatctgtccctaattataagacccttttgagaa |
93822 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 178 - 215
Target Start/End: Original strand, 24855281 - 24855318
Alignment:
| Q |
178 |
tactacatctgtccctaattataagaccatttggagaa |
215 |
Q |
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| T |
24855281 |
tactacatccgtccctaattataagaccattttgagaa |
24855318 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 177 - 205
Target Start/End: Complemental strand, 1450541 - 1450513
Alignment:
| Q |
177 |
atactacatctgtccctaattataagacc |
205 |
Q |
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| T |
1450541 |
atactacatctgtccctaattataagacc |
1450513 |
T |
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