View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11845_low_2 (Length: 787)

Name: NF11845_low_2
Description: NF11845
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11845_low_2
NF11845_low_2
[»] chr2 (4 HSPs)
chr2 (11-771)||(41079440-41080195)
chr2 (667-754)||(24762732-24762825)
chr2 (656-694)||(11364699-11364737)
chr2 (701-755)||(18053075-18053129)
[»] chr4 (5 HSPs)
chr4 (11-241)||(23072868-23073098)
chr4 (11-241)||(23077473-23077703)
chr4 (11-241)||(23111239-23111469)
chr4 (701-753)||(50343894-50343946)
chr4 (700-754)||(53737851-53737905)
[»] chr7 (3 HSPs)
chr7 (700-754)||(31902806-31902860)
chr7 (700-755)||(33887909-33887964)
chr7 (722-757)||(35754036-35754071)
[»] chr1 (6 HSPs)
chr1 (700-758)||(8836548-8836606)
chr1 (700-755)||(7549837-7549892)
chr1 (701-751)||(4220687-4220737)
chr1 (700-754)||(6983047-6983101)
chr1 (701-755)||(36621927-36621981)
chr1 (700-754)||(40203135-40203189)
[»] scaffold0009 (1 HSPs)
scaffold0009 (700-756)||(189062-189118)
[»] chr8 (5 HSPs)
chr8 (656-704)||(6270369-6270417)
chr8 (700-755)||(7528284-7528339)
chr8 (708-751)||(41385263-41385306)
chr8 (701-755)||(22209400-22209454)
chr8 (668-749)||(36025383-36025463)
[»] chr5 (5 HSPs)
chr5 (702-742)||(25710852-25710892)
chr5 (701-755)||(12947546-12947600)
chr5 (700-754)||(27016666-27016720)
chr5 (700-753)||(2816174-2816227)
chr5 (700-757)||(3758192-3758249)
[»] chr3 (1 HSPs)
chr3 (696-754)||(38009028-38009086)
[»] chr6 (1 HSPs)
chr6 (722-755)||(30038863-30038896)


Alignment Details
Target: chr2 (Bit Score: 653; Significance: 0; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 653; E-Value: 0
Query Start/End: Original strand, 11 - 771
Target Start/End: Complemental strand, 41080195 - 41079440
Alignment:
Q  11 aagcagagatagatggaattgggatgagtttagatctgaatgattatgacctagaaccagcaagaatgtcattacatagatttggtaacacatcagcaag 110  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41080195 aagcagtgatagatggaattgggatgagtttagatctgaatgattatgacctagaaccagcaagaatgtcattacatagatttggtaacacatcagcaag 41080096  T
Q  111 tagtttgtggtatgtgttggggtatatggaagctaagaagaggttgaaaaaaggtgagagagtattgatgataagtttaggtgctggctttaaatgcaac 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41080095 tagtttgtggtatgtgttggggtatatggaagctaagaagaggttgaaaaaaggtgagagagtattgatgataagtttaggtgctggctttaaatgcaac 41079996  T
Q  211 agttgttattgggaagtaatgagagatgttgttgttggtgatgataga---aatgtgtgggacgattgcattgattactatccaccacactctttggcca 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||    
T  41079995 agttgttattgggaagtaatgagagatgttgttgttggtgatgatagaaataatgtgtgggacgattgcattgattactatccaccacactctttggcca 41079896  T
Q  308 acccattcatggagaagtacggttggattaacaatattcaagatccaagcactttcaaactcaaacttgctgagtttcttctcactcttaagtgagattc 407  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41079895 acccattcatggagaagtacggttggattaacaatattcaagatccaagcactttcaaactcaaacttgctgagtttcttctcactcttaagtgagattc 41079796  T
Q  408 attatattcatatcaatcaattattataaggtactaatttacatgtgttgtattgtattttctctcatttttaaagtaaaaggaaca---aacatcactc 504  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   | ||||||||    
T  41079795 attatattcatatcaatcaattattataaggtactaatttacatgtgttgtattgtattttctctcatttttaaagtaaaaggaacagacatcatcactc 41079696  T
Q  505 attatattgtgcttttggattttattacaatttttatgttcctttagggttccttatgcaataaggtcttcactttctaaattttgtatgatatcataac 604  Q
    || || |||||||||||||||||||||||||||||||           |||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  41079695 atgattttgtgcttttggattttattacaatttttat-----------gttccttatgcaataaggtcttcagtttctaaattttgtatgatatcataac 41079607  T
Q  605 tgaaacctaccatagtacttgtttaaatttagtggggaattgtttaaggcattaaatggtatgtttttataaaaatttgtataatcaatatattggaaat 704  Q
    ||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  41079606 tgaaacctaccatggtacttgtttaaatttagcggggaattgtttaaggcattaaatggtatgtttttataaaaatttgtataattaatatattggaaat 41079507  T
Q  705 atttgactttcttaaggaataatttcttattttgaaattcttaaagagtgttttggaggtagatcat 771  Q
    |||| ||||| ||||||||||||||||||||||||||||||||||||||||| | ||||||||||||    
T  41079506 atttaacttttttaaggaataatttcttattttgaaattcttaaagagtgttctcgaggtagatcat 41079440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 667 - 754
Target Start/End: Original strand, 24762732 - 24762825
Alignment:
Q  667 gtttttataaaaatttgtataatcaatatattgga------aatatttgactttcttaaggaataatttcttattttgaaattcttaaagagtg 754  Q
    |||||||||||||| ||||||||||||||||||||      ||||||||||||| |||||||||| ||||| | ||||  || |||||||||||    
T  24762732 gtttttataaaaatatgtataatcaatatattggaatttgtaatatttgacttttttaaggaatattttctaaatttgggatccttaaagagtg 24762825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 656 - 694
Target Start/End: Complemental strand, 11364737 - 11364699
Alignment:
Q  656 ttaaatggtatgtttttataaaaatttgtataatcaata 694  Q
    ||||||||||  |||||||||||||||||||||||||||    
T  11364737 ttaaatggtaactttttataaaaatttgtataatcaata 11364699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 701 - 755
Target Start/End: Original strand, 18053075 - 18053129
Alignment:
Q  701 aaatatttgactttcttaaggaataatttcttattttgaaattcttaaagagtgt 755  Q
    |||||||||||||| |||   ||||||||||| ||||||||| ||||||||||||    
T  18053075 aaatatttgacttttttataaaataatttcttcttttgaaatccttaaagagtgt 18053129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 75; Significance: 4e-34; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 11 - 241
Target Start/End: Complemental strand, 23073098 - 23072868
Alignment:
Q  11 aagcagagatagatggaattgggatgagtttagatctgaatgattatgacctagaaccagcaagaatgtcattacatagatttggtaacacatcagcaag 110  Q
    |||||| ||| ||||||||||| |||||||||||| | | ||| ||||| || || || ||||| ||| || ||||| | || |||||||| || || ||    
T  23073098 aagcagtgattgatggaattggaatgagtttagatttaagtgaatatgatcttgagcctgcaaggatgacactacatcgtttcggtaacacttctgctag 23072999  T
Q  111 tagtttgtggtatgtgttggggtatatggaagctaagaagaggttgaaaaaaggtgagagagtattgatgataagtttaggtgctggctttaaatgcaac 210  Q
    ||| |||||||||||||| ||||| |||||||| || |||||| | || |||||||| |||||||| |||||||| || |||||||| |||||||||||     
T  23072998 tagcttgtggtatgtgttagggtacatggaagcaaaaaagaggctcaagaaaggtgatagagtatttatgataagctttggtgctggatttaaatgcaat 23072899  T
Q  211 agttgttattgggaagtaatgagagatgttg 241  Q
    ||||| |  |||||||| |||| ||||||||    
T  23072898 agttgcttatgggaagtgatgaaagatgttg 23072868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 11 - 241
Target Start/End: Complemental strand, 23077703 - 23077473
Alignment:
Q  11 aagcagagatagatggaattgggatgagtttagatctgaatgattatgacctagaaccagcaagaatgtcattacatagatttggtaacacatcagcaag 110  Q
    |||||| ||| |||||| |||| | |||||||||||| | ||| ||||| || || || ||||| ||| || ||||| | ||||||||||| || ||  |    
T  23077703 aagcagtgattgatggagttggaaagagtttagatctaagtgaatatgatcttgagcctgcaaggatgacactacatcgttttggtaacacttctgctgg 23077604  T
Q  111 tagtttgtggtatgtgttggggtatatggaagctaagaagaggttgaaaaaaggtgagagagtattgatgataagtttaggtgctggctttaaatgcaac 210  Q
    |||||||||||||||||| ||||| |||||||| || |||||| | ||||||||||| ||||| || |||||||| || |||||||| |||||||||||     
T  23077603 tagtttgtggtatgtgttagggtacatggaagccaaaaagaggctaaaaaaaggtgatagagtttttatgataagctttggtgctggatttaaatgcaat 23077504  T
Q  211 agttgttattgggaagtaatgagagatgttg 241  Q
    ||||| |  |||||||| |||| ||||||||    
T  23077503 agttgcttatgggaagtgatgaaagatgttg 23077473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 11 - 241
Target Start/End: Original strand, 23111239 - 23111469
Alignment:
Q  11 aagcagagatagatggaattgggatgagtttagatctgaatgattatgacctagaaccagcaagaatgtcattacatagatttggtaacacatcagcaag 110  Q
    |||||| ||| ||||||||||| |||||||||||| | | ||| ||||| || || || ||||| ||| || ||||| | || |||||||| || || ||    
T  23111239 aagcagtgattgatggaattggaatgagtttagatttaagtgaatatgatcttgagcctgcaaggatgacactacatcgtttcggtaacacttctgctag 23111338  T
Q  111 tagtttgtggtatgtgttggggtatatggaagctaagaagaggttgaaaaaaggtgagagagtattgatgataagtttaggtgctggctttaaatgcaac 210  Q
    ||| |||||||||||||| ||||| |||||||| || |||||| | || |||||||| |||||||| |||||||| || |||||||| |||||||||||     
T  23111339 tagcttgtggtatgtgttagggtacatggaagcaaaaaagaggctcaagaaaggtgatagagtatttatgataagctttggtgctggatttaaatgcaat 23111438  T
Q  211 agttgttattgggaagtaatgagagatgttg 241  Q
    ||||| |  |||||||| |||| ||||||||    
T  23111439 agttgcttatgggaagtgatgaaagatgttg 23111469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 701 - 753
Target Start/End: Original strand, 50343894 - 50343946
Alignment:
Q  701 aaatatttgactttcttaaggaataatttcttattttgaaattcttaaagagt 753  Q
    |||||||||||||| |||| |||||||| |||||||| |||| ||||||||||    
T  50343894 aaatatttgacttttttaaagaataattacttattttaaaatgcttaaagagt 50343946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 700 - 754
Target Start/End: Original strand, 53737851 - 53737905
Alignment:
Q  700 gaaatatttgactttcttaaggaataatttcttattttgaaattcttaaagagtg 754  Q
    ||||||||||| ||| |||| |||||||||||||||||| ||  |||||||||||    
T  53737851 gaaatatttgaattttttaaagaataatttcttattttggaacgcttaaagagtg 53737905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 700 - 754
Target Start/End: Original strand, 31902806 - 31902860
Alignment:
Q  700 gaaatatttgactttcttaaggaataatttcttattttgaaattcttaaagagtg 754  Q
    ||||||||||||||||||||||||||||||||||||||||| | |||||| ||||    
T  31902806 gaaatatttgactttcttaaggaataatttcttattttgaattgcttaaaaagtg 31902860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 700 - 755
Target Start/End: Original strand, 33887909 - 33887964
Alignment:
Q  700 gaaatatttgactttcttaaggaataatttcttattttgaaattcttaaagagtgt 755  Q
    ||||||||||||||| |||| ||||||||  |||||||| ||| ||||||||||||    
T  33887909 gaaatatttgacttttttaaagaataattatttattttggaatgcttaaagagtgt 33887964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 722 - 757
Target Start/End: Complemental strand, 35754071 - 35754036
Alignment:
Q  722 aataatttcttattttgaaattcttaaagagtgttt 757  Q
    ||||||||||| ||||||||||||||||||||||||    
T  35754071 aataatttctttttttgaaattcttaaagagtgttt 35754036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.0000000003; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 700 - 758
Target Start/End: Original strand, 8836548 - 8836606
Alignment:
Q  700 gaaatatttgactttcttaaggaataatttcttattttgaaattcttaaagagtgtttt 758  Q
    ||||||||||||||| |||| ||||||||  |||||| ||||| |||||||||||||||    
T  8836548 gaaatatttgacttttttaaagaataattgtttatttcgaaatgcttaaagagtgtttt 8836606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 700 - 755
Target Start/End: Complemental strand, 7549892 - 7549837
Alignment:
Q  700 gaaatatttgactttcttaaggaataatttcttattttgaaattcttaaagagtgt 755  Q
    ||||||||||||||| |||   ||| ||||||| ||||||||||||||||||||||    
T  7549892 gaaatatttgacttttttataaaattatttcttcttttgaaattcttaaagagtgt 7549837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 701 - 751
Target Start/End: Original strand, 4220687 - 4220737
Alignment:
Q  701 aaatatttgactttcttaaggaataatttcttattttgaaattcttaaaga 751  Q
    |||||||||||||||||||  ||||||||| || |||||||| ||||||||    
T  4220687 aaatatttgactttcttaaaaaataatttcataatttgaaatgcttaaaga 4220737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 700 - 754
Target Start/End: Original strand, 6983047 - 6983101
Alignment:
Q  700 gaaatatttgactttcttaaggaataatttcttattttgaaattcttaaagagtg 754  Q
    ||||||||||||| | |||| ||||||||||||| |||| ||| |||||||||||    
T  6983047 gaaatatttgactcttttaatgaataatttcttaatttggaatacttaaagagtg 6983101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 701 - 755
Target Start/End: Complemental strand, 36621981 - 36621927
Alignment:
Q  701 aaatatttgactttcttaaggaataatttcttattttgaaattcttaaagagtgt 755  Q
    |||||||| ||||| |||| |||||||| |||||||||||||  |||||||||||    
T  36621981 aaatatttaacttttttaaagaataattgcttattttgaaatgtttaaagagtgt 36621927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 700 - 754
Target Start/End: Original strand, 40203135 - 40203189
Alignment:
Q  700 gaaatatttgactttcttaaggaataatttcttattttgaaattcttaaagagtg 754  Q
    ||||||||||||||| ||| | ||||||||||| ||||| ||| |||||||||||    
T  40203135 gaaatatttgacttttttatgaaataatttcttgttttgtaatccttaaagagtg 40203189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 700 - 756
Target Start/End: Complemental strand, 189118 - 189062
Alignment:
Q  700 gaaatatttgactttcttaaggaataatttcttattttgaaattcttaaagagtgtt 756  Q
    ||||||||| ||||| |||| |||||||| |||||||| |||| |||||||||||||    
T  189118 gaaatatttaacttttttaaagaataattgcttattttaaaatgcttaaagagtgtt 189062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000005; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 656 - 704
Target Start/End: Complemental strand, 6270417 - 6270369
Alignment:
Q  656 ttaaatggtatgtttttataaaaatttgtataatcaatatattggaaat 704  Q
    ||||||||||| ||||||||||||||||| |||| ||||||||| ||||    
T  6270417 ttaaatggtatttttttataaaaatttgtgtaattaatatattgaaaat 6270369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 700 - 755
Target Start/End: Original strand, 7528284 - 7528339
Alignment:
Q  700 gaaatatttgactttcttaaggaataatttcttattttgaaattcttaaagagtgt 755  Q
    |||||||||||||||| ||| |||||||| |||||||| |||| |||||| |||||    
T  7528284 gaaatatttgactttcgtaaagaataattacttattttaaaatgcttaaaaagtgt 7528339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 708 - 751
Target Start/End: Complemental strand, 41385306 - 41385263
Alignment:
Q  708 tgactttcttaaggaataatttcttattttgaaattcttaaaga 751  Q
    ||||||||||||||||||||||||||||||| | | ||||||||    
T  41385306 tgactttcttaaggaataatttcttattttggattgcttaaaga 41385263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 701 - 755
Target Start/End: Complemental strand, 22209454 - 22209400
Alignment:
Q  701 aaatatttgactttcttaaggaataatttcttattttgaaattcttaaagagtgt 755  Q
    |||||||| ||||| ||||||||||||| ||| |||| |||| ||||||||||||    
T  22209454 aaatatttaacttttttaaggaataattgcttcttttaaaatgcttaaagagtgt 22209400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 668 - 749
Target Start/End: Original strand, 36025383 - 36025463
Alignment:
Q  668 tttttataaaaatttgtataatcaatatattggaaatatttgactttcttaaggaataatttcttattttgaaattcttaaa 749  Q
    ||||||| ||||| ||| |||| ||||||||| ||||||||||||||||||   | || ||||||||||| |||| ||||||    
T  36025383 tttttatgaaaatctgtgtaattaatatattg-aaatatttgactttcttattaactactttcttattttaaaatacttaaa 36025463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000005; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 702 - 742
Target Start/End: Original strand, 25710852 - 25710892
Alignment:
Q  702 aatatttgactttcttaaggaataatttcttattttgaaat 742  Q
    ||||||||| |||||||| ||||||||||||||||||||||    
T  25710852 aatatttgaatttcttaaagaataatttcttattttgaaat 25710892  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 701 - 755
Target Start/End: Complemental strand, 12947600 - 12947546
Alignment:
Q  701 aaatatttgactttcttaaggaataatttcttattttgaaattcttaaagagtgt 755  Q
    ||||||||||||||||||  ||||||||| ||||||||||||  || ||||||||    
T  12947600 aaatatttgactttcttatagaataatttattattttgaaatcgttgaagagtgt 12947546  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 700 - 754
Target Start/End: Complemental strand, 27016720 - 27016666
Alignment:
Q  700 gaaatatttgactttcttaaggaataatttcttattttgaaattcttaaagagtg 754  Q
    ||||| ||||||||| ||| ||||||||||||| ||||| ||| |||||||||||    
T  27016720 gaaatttttgacttttttatggaataatttcttcttttggaatgcttaaagagtg 27016666  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 700 - 753
Target Start/End: Complemental strand, 2816227 - 2816174
Alignment:
Q  700 gaaatatttgactttcttaaggaataatttcttattttgaaattcttaaagagt 753  Q
    ||||||||||| ||| |||| |||||||| ||| ||||||||| ||||||||||    
T  2816227 gaaatatttgatttttttaaagaataattgcttcttttgaaatgcttaaagagt 2816174  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 700 - 757
Target Start/End: Complemental strand, 3758249 - 3758192
Alignment:
Q  700 gaaatatttgactttcttaaggaataatttcttattttgaaattcttaaagagtgttt 757  Q
    ||||||||||||||| |||| ||||||||  ||||||| ||||  |||||||||||||    
T  3758249 gaaatatttgacttttttaaagaataattgattattttaaaatgtttaaagagtgttt 3758192  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 696 - 754
Target Start/End: Complemental strand, 38009086 - 38009028
Alignment:
Q  696 attggaaatatttgactttcttaaggaataatttcttattttgaaattcttaaagagtg 754  Q
    |||| |||| |||||||||||||||||||||||||| | |||  ||| |||||||||||    
T  38009086 attgaaaatgtttgactttcttaaggaataatttctcaatttagaatgcttaaagagtg 38009028  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 722 - 755
Target Start/End: Complemental strand, 30038896 - 30038863
Alignment:
Q  722 aataatttcttattttgaaattcttaaagagtgt 755  Q
    |||||||||||||||| |||||||||||||||||    
T  30038896 aataatttcttattttaaaattcttaaagagtgt 30038863  T

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