View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11845_low_3 (Length: 612)
Name: NF11845_low_3
Description: NF11845
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11845_low_3 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 441; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 441; E-Value: 0
Query Start/End: Original strand, 19 - 542
Target Start/End: Original strand, 8930998 - 8931526
Alignment:
| Q |
19 |
aagggcaagctgttagtttctataggagggtctgtacaccccatggcaagattctaaacccatcctcgcagggacgtgtcttaggcccaaccgtttgtta |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8930998 |
aagggcaagctgttagtttctataggagggtctgtacaccccatggcaagattctaaacccttcctcgcagggacgtgtcttaggcccaaccgtttgtta |
8931097 |
T |
|
| Q |
119 |
tagctagggggcgactagggtgagggaggcgatagccctcgcagtacggtttagtggttttattgtaatctgaatcgtagtaactagtaatatatattgc |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8931098 |
tagctagggggcgactagggtgagggaggcgatagccctcgcagtacggttcagtggttttattgtaatctgaatcgtagtaactagtaatatatattgc |
8931197 |
T |
|
| Q |
219 |
ttgtaaaactaacatgggttttaatgagtttcatccatggattcatatacggtaaagactagatctcaaacatggacaagcaaagatcaattacaagaga |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| ||||| |
|
|
| T |
8931198 |
ttgtaaaactaacatgggttttaatgagttacatccatggattcatatacgggaaagactagatctcaaacatggagaagcaaagatcaattacgagaga |
8931297 |
T |
|
| Q |
319 |
accacgacgtttccccttgtaacaaaataaacatggaagatgatttttcttatgtac-nnnnnnnnngtaagagcatatatttttcttatc----tactt |
413 |
Q |
| |
|
|||||||||||||||||| |||||||||| |||||||||||||||||| |||||||| |||||||||||||||||||||||| ||||| |
|
|
| T |
8931298 |
accacgacgtttccccttataacaaaatatacatggaagatgatttttgttatgtacttttttttttgtaagagcatatatttttcttatctacttactt |
8931397 |
T |
|
| Q |
414 |
aaatcatgtgagtgatgataaaatcaacaatcatgcatggctattttttcacattgcgacaaattaaccagtgtttatcaatcatcatactaaatgcttc |
513 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8931398 |
aaatcatgtgagtgatgataaaatcaacaatcatgcatggctattttttcacattgcgacaaattaaccagtgtttatcaatcatcatactaaatgcttc |
8931497 |
T |
|
| Q |
514 |
tccactcaacgagagaaacaattcattcc |
542 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
8931498 |
tccactcaacgagagaaacaattcattcc |
8931526 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University