View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11845_low_4 (Length: 506)
Name: NF11845_low_4
Description: NF11845
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11845_low_4 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 241; Significance: 1e-133; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 255 - 499
Target Start/End: Complemental strand, 47286457 - 47286213
Alignment:
| Q |
255 |
ccaagaaactaacgatccaagcgaaaacaacttatatccattcgttcatcttctacctaatggaaaccttttcattttcgcaaacacacgatccatttta |
354 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47286457 |
ccaagaaactaacgatccaagcgaaaacaacttatatccattcgttcatcttctacctaatggaaaccttttcattttcgcaaacacacgatccatttta |
47286358 |
T |
|
| Q |
355 |
tttgattacaaacaaaacgtcgctgttaaagaatttcctgagattccaggtggtgatcctcataactatcctagttcaggatcatctgttcttcttccat |
454 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47286357 |
tttgattacaaacaaaacgtcgttgttaaagaatttcctgagattccaggtggtgatcctcataactatcctagttcaggatcatctgttcttcttccat |
47286258 |
T |
|
| Q |
455 |
tagacgaaaaccaaatctccatggaagctacaatcatgatctgtg |
499 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47286257 |
tagacgaaaaccaaatctccatggaagctacaatcatgatctgtg |
47286213 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 193; E-Value: 1e-104
Query Start/End: Original strand, 17 - 209
Target Start/End: Complemental strand, 47286695 - 47286503
Alignment:
| Q |
17 |
gtttcaacgatggtgagcgtcgaattcgaatgttcacaccatgtttcaacgaaaattgtgattggattgaattcccaagttacttatccgaaagaagatg |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47286695 |
gtttcaacgatggtgagcgtcgaattcgaatgttcacaccatgtttcaacgaaaattgtgattggattgaattcccaagttacttatccgaaagaagatg |
47286596 |
T |
|
| Q |
117 |
gtatgcaacaaatcaaatactaccagataatcgcattataattattggtggtagaagacaattcaactatgaattcattcctaaaacaacgac |
209 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47286595 |
gtatgcaacaaatcaaatactaccagataatcgcattataattattggtggtagaagacaattcaactatgaattcattcctaaaacaacgac |
47286503 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University