View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11845_low_8 (Length: 334)
Name: NF11845_low_8
Description: NF11845
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11845_low_8 |
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| [»] scaffold0045 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 292; Significance: 1e-164; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 10 - 321
Target Start/End: Complemental strand, 14125908 - 14125597
Alignment:
| Q |
10 |
gcataggaggatagaattctctaatagcaacagcatccaaaagtggaccacaagtaggatcttcttgaataccaggattatggaatgtaactttaaccaa |
109 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
14125908 |
gcataggaggatagaattctctaatagcaacagcatccaaaagtggaccacaagtaggatcttcttgaataccagggttatggaatgtaactttaaccaa |
14125809 |
T |
|
| Q |
110 |
agaagaactagccttgaatccccaagcaataacatcaccattgaggctataaagtgtttgtaaaggaacttcaccagattgtggaggcactgagattctc |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
14125808 |
agaagaactagccttgaatccccaagcaataacatcaccattgaggctataaagtgtttgcaaaggaacttcaccagattgtggaggcactgagattctc |
14125709 |
T |
|
| Q |
210 |
aaaacttcatcttgagcacaagttcttgtggctcctaagattagagcatacattgtgccaggtttgactttgatggtttgtgagatggaagcttcatttc |
309 |
Q |
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||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
14125708 |
aaaacctcatcttgagcacaagttcttgtggctcctaatattagagcatacattgtgccaggtttgactttgatggtttgtgagatggatgcttcatttc |
14125609 |
T |
|
| Q |
310 |
caagcctaactg |
321 |
Q |
| |
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|||||||||||| |
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| T |
14125608 |
caagcctaactg |
14125597 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 10 - 319
Target Start/End: Complemental strand, 14129757 - 14129448
Alignment:
| Q |
10 |
gcataggaggatagaattctctaatagcaacagcatccaaaagtggaccacaagtaggatcttcttgaataccaggattatggaatgtaactttaaccaa |
109 |
Q |
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|||| ||||| ||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| |||||||| ||||||||| | || |
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| T |
14129757 |
gcatcggagggtagaactctctaatagcaacagcatccaaaagtggaccacaagtagggtcttcttgcataccagggttatggaaggtaactttagcaaa |
14129658 |
T |
|
| Q |
110 |
agaagaactagccttgaatccccaagcaataacatcaccattgaggctataaagtgtttgtaaaggaacttcaccagattgtggaggcactgagattctc |
209 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||| ||||||||||||||||| |
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| T |
14129657 |
agaagatctagccttgaatccccaagcaataacatcaccattgaggctataaagtgtttgcaaaggaacatcaccagattgtagaggcactgagattctc |
14129558 |
T |
|
| Q |
210 |
aaaacttcatcttgagcacaagttcttgtggctcctaagattagagcatacattgtgccaggtttgactttgatggtttgtgagatggaagcttcatttc |
309 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| |||||||||||||||||||||||||| ||||| |||||||||| |
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| T |
14129557 |
aaaacttcatcttgagcacaagttcttgtggctcctaagattatagcataccatgtaccaggtttgactttgatggtttgtgaaatggatgcttcatttc |
14129458 |
T |
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| Q |
310 |
caagcctaac |
319 |
Q |
| |
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|||||||||| |
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| T |
14129457 |
caagcctaac |
14129448 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 10 - 321
Target Start/End: Complemental strand, 14112860 - 14112549
Alignment:
| Q |
10 |
gcataggaggatagaattctctaatagcaacagcatccaaaagtggaccacaagtaggatcttcttgaataccaggattatggaatgtaactttaaccaa |
109 |
Q |
| |
|
|||| ||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||| ||||||||||| | | |
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| T |
14112860 |
gcatcggagggtagaactctctaatagcaacagcatccaaaagtggaccacaagtaggatcttcttgaacaccagggttatgaaatgtaacttttgcaag |
14112761 |
T |
|
| Q |
110 |
agaagaactagccttgaatccccaagcaataacatcaccattgaggctataaagtgtttgtaaaggaacttcaccagattgtggaggcactgagattctc |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||| |
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| T |
14112760 |
agaagaactagccttgaatccccaagcaataacatcaccattgaggctataaagtgtttgcaaaggaacttcaccagattgtggaggtactgagattctc |
14112661 |
T |
|
| Q |
210 |
aaaacttcatcttgagcacaagttcttgtggctcctaagattagagcata-cattgtgccaggtttgactttgatggtttgtgagatggaagcttcattt |
308 |
Q |
| |
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|| |||||||||||||||||||| || | |||||||| ||||||||||| ||||| ||||||||||| ||||||||||| |||||||| || |||||| |
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| T |
14112660 |
aatacttcatcttgagcacaagtcctagatgctcctaatattagagcataccattg-accaggtttgaccttgatggtttgggagatggaggcatcattt |
14112562 |
T |
|
| Q |
309 |
ccaagcctaactg |
321 |
Q |
| |
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||||| ||||||| |
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| T |
14112561 |
ccaagtctaactg |
14112549 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0045 (Bit Score: 92; Significance: 1e-44; HSPs: 1)
Name: scaffold0045
Description:
Target: scaffold0045; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 10 - 237
Target Start/End: Original strand, 56166 - 56393
Alignment:
| Q |
10 |
gcataggaggatagaattctctaatagcaacagcatccaaaagtggaccacaagtaggatcttcttgaataccaggattatggaatgtaactttaaccaa |
109 |
Q |
| |
|
|||| ||||| || || ||||| ||||||| ||||| | ||||||||||||||||||||||||||||| |||||| ||||| || || |||||| | | |
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| T |
56166 |
gcattggagggtaaaactctctgatagcaattgcatcaagaagtggaccacaagtaggatcttcttgaacaccagggttatgaaaagtcactttagcaac |
56265 |
T |
|
| Q |
110 |
agaagaactagccttgaatccccaagcaataacatcaccattgaggctataaagtgtttgtaaaggaacttcaccagattgtggaggcactgagattctc |
209 |
Q |
| |
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| ||| |||| |||||||||||||||||||||||||||||||| ||||| | |||||| | ||||| ||||| | |||||||||||| |||||||| |
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| T |
56266 |
attagatgtagctttgaatccccaagcaataacatcaccattgagactatacaatgtttgcagcggaacatcaccggtttgtggaggcacggagattctt |
56365 |
T |
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| Q |
210 |
aaaacttcatcttgagcacaagttcttg |
237 |
Q |
| |
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|||||||||||||| ||||||||||||| |
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| T |
56366 |
aaaacttcatcttgtgcacaagttcttg |
56393 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 91
Target Start/End: Complemental strand, 2285912 - 2285851
Alignment:
| Q |
30 |
ctaatagcaacagcatccaaaagtggaccacaagtaggatcttcttgaataccaggattatg |
91 |
Q |
| |
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|||| |||||||| ||| | ||| |||||||||| ||||||||||| || |||||||||||| |
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| T |
2285912 |
ctaagagcaacagaatcaataagaggaccacaagcaggatcttcttcaacaccaggattatg |
2285851 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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