View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11845_low_9 (Length: 261)
Name: NF11845_low_9
Description: NF11845
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11845_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 170; Significance: 3e-91; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 18 - 247
Target Start/End: Original strand, 18342361 - 18342585
Alignment:
| Q |
18 |
cagttaccacaaataacatcaaagtatcttaatcattctttcctcacataaaccttacttatacctagtaaaatacaatgaagagtatggttgacttccc |
117 |
Q |
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| T |
18342361 |
cagttaccacgaataacatcaaagtatcttaatcattctttcctcacataaagcttacttatacctagtaaaatacaatgaagagtatggttgattttcc |
18342460 |
T |
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| Q |
118 |
aggtaagagaggcagaccgtaaacgacatagtctgccaagtcttttttagcaagaacccaatcaaatacaactactcaagatatttcacttcccttggga |
217 |
Q |
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| T |
18342461 |
aggtaagagaggcagaccgtaaacgacatagtctaccaagtcttttctagcaagaacccaatcgaat-----tactcaagatatttcacttcccttgaga |
18342555 |
T |
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| Q |
218 |
atcttaaacttaatgtctaacgatgttctt |
247 |
Q |
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| T |
18342556 |
atcttaaacttaatatctaacaatgttctt |
18342585 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 119; Significance: 7e-61; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 30 - 241
Target Start/End: Original strand, 16341899 - 16342112
Alignment:
| Q |
30 |
ataacatcaaagtatcttaatcattctttcctcacataaaccttacttatacctagtaaaatacaatgaagagt--atggttgacttcccaggtaagaga |
127 |
Q |
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| T |
16341899 |
ataacctcaaagtatcttaatcattctttcctcacataaaccttatttttacccagtaaaatagaatgaatagtgtatggttgacttcccaggtaagaga |
16341998 |
T |
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| Q |
128 |
ggcagaccgtaaacgacatagtctgccaagtcttttttagcaagaacccaatcaaatacaactactcaagatatttcacttcccttgggaatcttaaact |
227 |
Q |
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| T |
16341999 |
ggcagaccgtaaacgacatagtccaccaagtctttccttgccagaacccaaccgaatacaactactcaaggtattccactttctttggggatcataaact |
16342098 |
T |
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| Q |
228 |
taatgtctaacgat |
241 |
Q |
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|||| ||||||||| |
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| T |
16342099 |
taatatctaacgat |
16342112 |
T |
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