View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11846_low_2 (Length: 563)
Name: NF11846_low_2
Description: NF11846
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11846_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 365; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 138 - 547
Target Start/End: Original strand, 4757876 - 4758287
Alignment:
| Q |
138 |
gatatgatggatttattgatggaagtcaaagatgaagagggtaggatgttggaggatgaagacattatagacttgcttcttgtgttcttgttagctggtc |
237 |
Q |
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| T |
4757876 |
gatatgatggatttattgatggaagtcaaagatgaagagggtaggatgttggaggatgaagacattatagacttgcttcttgtgttcttgttagctggtc |
4757975 |
T |
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| Q |
238 |
atgaaagctctgctcatggaattttgtggactattatttacctcattgatcatccacatgtcttccaaagggccaaggtcttttaatattaatttcaaga |
337 |
Q |
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| T |
4757976 |
atgaaagctctgctcatggaattttgtggactattatttacctcattgatcatccacatgtcttccaaagggccaaggtcttttaatattaatttcaaga |
4758075 |
T |
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| Q |
338 |
cnnnnnnnnccttcttaatccatagtttatggaaatggtccacatatatacattttataataatgttgcattttcaaatcaagttactgaattttaaaaa |
437 |
Q |
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| T |
4758076 |
cttttttttccttcttaatccatagtttatggaaatggtccacatatatacattttataataatgttgcattttcaaatcaagttactgaatttaaaaaa |
4758175 |
T |
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| Q |
438 |
a--taaataaactatgcatctttcagaaagaacaagaagagatcatggaaacaaggccttccactcaaaaaggactcaaccttaaggaaattaagcaaat |
535 |
Q |
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| T |
4758176 |
aataaaataaactatgcatctttcagaaagaacaagaagagatcatggaaacaaggccttccactcaaaaaggactgaaccttaaggaaattaagcaaat |
4758275 |
T |
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| Q |
536 |
gcaatatctttc |
547 |
Q |
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| T |
4758276 |
gcaatatctttc |
4758287 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 1 - 96
Target Start/End: Original strand, 4757739 - 4757834
Alignment:
| Q |
1 |
atggattttattattcaatatattaattgattaatttatggttgtgtgtttaggcaagaaagaagttgatgaagctattgcaagccttggtggatc |
96 |
Q |
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| T |
4757739 |
atggattttactattcaatatattaattgattaatttatggttgtgtgtttaggcaagaaagaagttgatgaagctattgcaagccttggtggatc |
4757834 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 142 - 316
Target Start/End: Original strand, 4749399 - 4749573
Alignment:
| Q |
142 |
tgatggatttattgatggaagtcaaagatgaagagggtaggatgttggaggatgaagacattatagacttgcttcttgtgttcttgttagctggtcatga |
241 |
Q |
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| T |
4749399 |
tgatggagttgttgatggaagccagagacgacgagggtgagaagttggaagatgaagacattatagacttgcttcttttgttcttgttagctggtcatga |
4749498 |
T |
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| Q |
242 |
aagctctgctcatggaattttgtggactattatttacctcattgatcatccacatgtcttccaaagggccaaggt |
316 |
Q |
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| T |
4749499 |
aagctctgcttatggtgttttgtggaccgttatcaacctcactaatcatccacatgtcttcgaaagagccaaggt |
4749573 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 455 - 548
Target Start/End: Original strand, 4749649 - 4749742
Alignment:
| Q |
455 |
ctttcagaaagaacaagaagagatcatggaaacaaggccttccactcaaaaaggactcaaccttaaggaaattaagcaaatgcaatatctttct |
548 |
Q |
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| T |
4749649 |
ctttcagaaagaacaagaagagattatggcaagaaggccttccgatcaaaaaggacttacacatacggaaattaggcaaatgaaatatctttct |
4749742 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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