View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11846_low_3 (Length: 279)
Name: NF11846_low_3
Description: NF11846
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11846_low_3 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 165; Significance: 3e-88; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 48 - 271
Target Start/End: Complemental strand, 27646328 - 27646102
Alignment:
| Q |
48 |
gattctgggtggctaagctgagggagatgaaactcatatccttctaccaacgttgaattgcattatctgtaataatattgttcgacttttatttcatctg |
147 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27646328 |
gattctgggtggctaagctgagggagatgaaactcatacccttctaccaacattgaattgcattatctgtaataatattgttcgacttttatttcatctg |
27646229 |
T |
|
| Q |
148 |
tataccacaaaaacttttaataacagtca---nnnnnnnnctataaaccagtatcatctgcacgcaactgcagggactacttccattgagctgtatgttc |
244 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| |
|
|
| T |
27646228 |
tataccacaaaaacttttaataacagtcattttttttcttctataaaccagtatcatctgcacgcaactgcagagactactttcattgagctgtatgttc |
27646129 |
T |
|
| Q |
245 |
tcctcagtcccaacatattcctttgct |
271 |
Q |
| |
|
||||||||||||| |||||||||||| |
|
|
| T |
27646128 |
ccctcagtcccaacgtattcctttgct |
27646102 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 16 - 111
Target Start/End: Complemental strand, 27643154 - 27643059
Alignment:
| Q |
16 |
ctttgagtatgcagatacgtttaagagtatcagattctgggtggctaagctgagggagatgaaactcatatccttctaccaacgttgaattgcatt |
111 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| || ||||| ||| |||||||||||| |
|
|
| T |
27643154 |
ctttgagtatgcagatacgtttaagagtatcagattctgggtggctaagttgagggagatgaaactcatacccgtctacaaacattgaattgcatt |
27643059 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 20 - 98
Target Start/End: Original strand, 50247741 - 50247819
Alignment:
| Q |
20 |
gagtatgcagatacgtttaagagtatcagattctgggtggctaagctgagggagatgaaactcatatccttctaccaac |
98 |
Q |
| |
|
|||||||| ||||||||||||||||||| | ||||||||||||||||||||||||||||||| ||| ||| |||||||| |
|
|
| T |
50247741 |
gagtatgctgatacgtttaagagtatcaaactctgggtggctaagctgagggagatgaaacttataccctcctaccaac |
50247819 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 17 - 104
Target Start/End: Original strand, 50254875 - 50254962
Alignment:
| Q |
17 |
tttgagtatgcagatacgtttaagagtatcagattctgggtggctaagctgagggagatgaaactcatatccttctaccaacgttgaa |
104 |
Q |
| |
|
||||||||||| || |||||||| ||| | | |||||||||| ||||||||||||||||| |||||| || ||||| ||| ||||| |
|
|
| T |
50254875 |
tttgagtatgctgagacgtttaatagtgtgaaattctgggtgatgaagctgagggagatgaatctcatacccatctacgaacattgaa |
50254962 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University