View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11846_low_4 (Length: 275)
Name: NF11846_low_4
Description: NF11846
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11846_low_4 |
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Alignment Details
Target: chr6 (Bit Score: 253; Significance: 1e-141; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 19 - 271
Target Start/End: Complemental strand, 31269276 - 31269024
Alignment:
| Q |
19 |
ttggaggaatttttgaagattccaatggctatgcatgatatgaatgaagaggaattattttggagagcttcgatgattcctatgattcataaacctccat |
118 |
Q |
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| T |
31269276 |
ttggaggaatttttgaagattccaatggctatgcatgatatgaatgaagaggaattattttggagagcttcgatgattcctatgattcataaacctccat |
31269177 |
T |
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| Q |
119 |
tcaaacaaataccaaaggttgcatttatgtttttgaccaaaggacatgttttattggctcctttgtgggagaaattcttcaaaggaaatgaagggttgta |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31269176 |
tcaaacaaataccaaaggttgcatttatgtttttgaccaaaggacatgttttattggctcctttgtgggagaaattcttcaaaggaaatgaagggttgta |
31269077 |
T |
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| Q |
219 |
ttctatctacattcatccaaatccttctttcaatgaaacggtttatgatcaaa |
271 |
Q |
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| T |
31269076 |
ttctatctacattcatccaaatccttctttcaatgaaacggtttatgatcaaa |
31269024 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 130; Significance: 2e-67; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 31 - 264
Target Start/End: Complemental strand, 54479395 - 54479162
Alignment:
| Q |
31 |
ttgaagattccaatggctatgcatgatatgaatgaagaggaattattttggagagcttcgatgattcctatgattcataaacctccattcaaacaaatac |
130 |
Q |
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||||||||||| |||||||||||||| |||||||| || ||||| |||||||||||||| || ||||||||||||||| ||||||||||||||| || |
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| T |
54479395 |
ttgaagattcctatggctatgcatgacatgaatgaggatgaattgttttggagagcttcattggaacctatgattcataaaactccattcaaacaaacac |
54479296 |
T |
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| Q |
131 |
caaaggttgcatttatgtttttgaccaaaggacatgttttattggctcctttgtgggagaaattcttcaaaggaaatgaagggttgtattctatctacat |
230 |
Q |
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| T |
54479295 |
caaaggttgcgtttatgttcttgacaataggtcctgttttgttggctccactttgggagaaattcttcaaaggaaatgaagggttatattctatctacat |
54479196 |
T |
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| Q |
231 |
tcatccaaatccttctttcaatgaaacggtttat |
264 |
Q |
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| T |
54479195 |
acatcctaatccttctttcaatgaaatggtttat |
54479162 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 118; Significance: 3e-60; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 18 - 271
Target Start/End: Original strand, 1139329 - 1139582
Alignment:
| Q |
18 |
attggaggaatttttgaagattccaatggctatgcatgatatgaatgaagaggaattattttggagagcttcgatgattcctatgattcataaacctcca |
117 |
Q |
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|||||| ||||| || |||||||| | |||||||||||| |||||||| || |||||||||||||||||||| || |||||||||||||||| ||||| |
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| T |
1139329 |
attggaagaattattaaagattcctaaggctatgcatgacatgaatgaggatgaattattttggagagcttcattggctcctatgattcataaaactcca |
1139428 |
T |
|
| Q |
118 |
ttcaaacaaataccaaaggttgcatttatgtttttgaccaaaggacatgttttattggctcctttgtgggagaaattcttcaaaggaaatgaagggttgt |
217 |
Q |
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|| ||||||| ||||||||||||||| ||||| ||||| ||||| | | |||| |||||||| | |||||||||||||| |||||||| |||||||||| |
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| T |
1139429 |
tttaaacaaacaccaaaggttgcattcatgttcttgacaaaaggtcctattttgttggctccgctttgggagaaattctttaaaggaaacgaagggttgt |
1139528 |
T |
|
| Q |
218 |
attctatctacattcatccaaatccttctttcaatgaaacggtttatgatcaaa |
271 |
Q |
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|||| |||||| ||||||| | |||||| ||||||||||| |||||| |||||| |
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| T |
1139529 |
attcgatctacgttcatcctagtccttccttcaatgaaacagtttataatcaaa |
1139582 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 19 - 271
Target Start/End: Original strand, 1136119 - 1136371
Alignment:
| Q |
19 |
ttggaggaatttttgaagattccaatggctatgcatgatatgaatgaagaggaattattttggagagcttcgatgattcctatgattcataaacctccat |
118 |
Q |
| |
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||||| ||||| || |||||||| | |||||||||||| ||||| || || |||||||||||||||||||| || |||||||||||||||| |||||| |
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| T |
1136119 |
ttggaagaattattaaagattcctaaggctatgcatgacatgaacgaggatgaattattttggagagcttcattggctcctatgattcataaaactccat |
1136218 |
T |
|
| Q |
119 |
tcaaacaaataccaaaggttgcatttatgtttttgaccaaaggacatgttttattggctcctttgtgggagaaattcttcaaaggaaatgaagggttgta |
218 |
Q |
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| ||||||| ||||||||||||||| ||||| ||||| ||||| | |||||| || ||||| | ||||||||||||||||||||||| ||||||||||| |
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| T |
1136219 |
ttaaacaaacaccaaaggttgcattcatgttcttgacaaaaggtcctgttttgttagctccgctttgggagaaattcttcaaaggaaacgaagggttgta |
1136318 |
T |
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| Q |
219 |
ttctatctacattcatccaaatccttctttcaatgaaacggtttatgatcaaa |
271 |
Q |
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||| |||||| ||||||| | ||||| ||||||||||| |||||| |||||| |
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| T |
1136319 |
ttcgatctacgttcatcctagcccttccttcaatgaaaccgtttataatcaaa |
1136371 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 103; Significance: 3e-51; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 33 - 263
Target Start/End: Complemental strand, 48324600 - 48324370
Alignment:
| Q |
33 |
gaagattccaatggctatgcatgatatgaatgaagaggaattattttggagagcttcgatgattcctatgattcataaacctccattcaaacaaatacca |
132 |
Q |
| |
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|||||||||||||| || ||||||||||| || || ||||| ||| | ||| ||||| ||||| |||||||||| ||||||| ||||| |||| |||| |
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| T |
48324600 |
gaagattccaatggttacacatgatatgaacgatgatgaattgtttcgaagaacttcgttgatttctatgattcacgaacctccgttcaatcaaacacca |
48324501 |
T |
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| Q |
133 |
aaggttgcatttatgtttttgaccaaaggacatgttttattggctcctttgtgggagaaattcttcaaaggaaatgaagggttgtattctatctacattc |
232 |
Q |
| |
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||| |||| |||||||||||||| ||||| | || || || |||||||| |||||||||||||||||||||||||||||| ||||||| |||||||||| |
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| T |
48324500 |
aagattgcctttatgtttttgacaaaaggtcccgtcttgttagctcctttttgggagaaattcttcaaaggaaatgaagggatgtattcaatctacattc |
48324401 |
T |
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| Q |
233 |
atccaaatccttctttcaatgaaacggttta |
263 |
Q |
| |
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|||||| ||| ||||||||| |||||||||| |
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| T |
48324400 |
atccaagtccatctttcaatcaaacggttta |
48324370 |
T |
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