View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11847_high_11 (Length: 397)
Name: NF11847_high_11
Description: NF11847
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11847_high_11 |
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Alignment Details
Target: chr4 (Bit Score: 319; Significance: 1e-180; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 20 - 387
Target Start/End: Complemental strand, 26615358 - 26614990
Alignment:
| Q |
20 |
caaagtttaattactgcattgcacgaggtgtttcttctaggttaaaaaagaatgtcatattgattcattagatatgactaatgactgcaatgaatttttg |
119 |
Q |
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| T |
26615358 |
caaagtttaattactgcattgcatgaggtgtttcttctaggttaaaaaagaatgtcatattgattcattagatatgactaatgactgcaatgaatttttg |
26615259 |
T |
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| Q |
120 |
tcaaaatatattatattgacaggtgctgcaggaaaaaggcattcatatatgggatggcaatgcatccagggaataccttgacaggcaagcatgactattg |
219 |
Q |
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| T |
26615258 |
tcaaaatatattatattgacaggtgctgcaggaaaaaggcattcatatatgggatggcaatgcatccagggaataccttgacaggcaagcatgactaatg |
26615159 |
T |
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| Q |
220 |
actagtttatttattgcaa-nnnnnnnnnnctctcagttattaactggatttgcaatttattttacagcattggtttgaaagaaagggaagaggctgact |
318 |
Q |
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| T |
26615158 |
actagtttatttattgcaattttttttcttctctcagttattaactggatttgcaatttattttacagcattggtttgaaagaaagggaagaggctgact |
26615059 |
T |
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| Q |
319 |
taggacctgtttatgggtttcagtggaggcattttggtgcaaggtaggtggattgcgcctttgtctgtg |
387 |
Q |
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| T |
26615058 |
taggacctgtttatgggtttcagtggaggcattttggtgcaaggtaggtggattgcgcctttttctgtg |
26614990 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 56; Significance: 4e-23; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 281 - 372
Target Start/End: Complemental strand, 5316841 - 5316750
Alignment:
| Q |
281 |
ttacagcattggtttgaaagaaagggaagaggctgacttaggacctgtttatgggtttcagtggaggcattttggtgcaaggtaggtggatt |
372 |
Q |
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| T |
5316841 |
ttacagcattggtttgtcagagagggaagagggtgatttaggacctgtttatgggtttcagtggaggcactttggtgccaagtaagtggatt |
5316750 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 130 - 212
Target Start/End: Complemental strand, 5317000 - 5316918
Alignment:
| Q |
130 |
ttatattgacaggtgctgcaggaaaaaggcattcatatatgggatggcaatgcatccagggaataccttgacaggcaagcatg |
212 |
Q |
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| T |
5317000 |
ttatattgacaggtgttgcagcaaaaaggcattcatatatgggatgataatgcatccagggagttccttgacaggcgagcatg |
5316918 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 56; Significance: 4e-23; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 281 - 372
Target Start/End: Complemental strand, 54758160 - 54758069
Alignment:
| Q |
281 |
ttacagcattggtttgaaagaaagggaagaggctgacttaggacctgtttatgggtttcagtggaggcattttggtgcaaggtaggtggatt |
372 |
Q |
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|||||||||||||||| ||| |||||||||| ||| |||||||||||||||||||||||||||||||| |||||||| | ||| ||||||| |
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| T |
54758160 |
ttacagcattggtttgtcagagagggaagagggtgatttaggacctgtttatgggtttcagtggaggcactttggtgccaagtaagtggatt |
54758069 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 130 - 212
Target Start/End: Complemental strand, 54758319 - 54758237
Alignment:
| Q |
130 |
ttatattgacaggtgctgcaggaaaaaggcattcatatatgggatggcaatgcatccagggaataccttgacaggcaagcatg |
212 |
Q |
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||||||||||||||| ||||| |||||||||||||||||||||||| |||||||||||||| | ||||||||||| |||||| |
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| T |
54758319 |
ttatattgacaggtgttgcagcaaaaaggcattcatatatgggatgataatgcatccagggagttccttgacaggcgagcatg |
54758237 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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