View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11847_high_18 (Length: 254)

Name: NF11847_high_18
Description: NF11847
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11847_high_18
NF11847_high_18
[»] chr7 (3 HSPs)
chr7 (6-239)||(31173704-31173937)
chr7 (11-54)||(4996430-4996473)
chr7 (161-228)||(31175301-31175368)
[»] chr8 (2 HSPs)
chr8 (6-54)||(44006396-44006444)
chr8 (9-54)||(44007567-44007612)
[»] chr4 (3 HSPs)
chr4 (8-54)||(53687715-53687761)
chr4 (11-54)||(55245985-55246028)
chr4 (9-54)||(55246557-55246602)
[»] chr6 (1 HSPs)
chr6 (11-54)||(4222796-4222839)
[»] chr2 (1 HSPs)
chr2 (8-54)||(40658306-40658352)
[»] chr1 (1 HSPs)
chr1 (9-54)||(37560771-37560816)


Alignment Details
Target: chr7 (Bit Score: 230; Significance: 1e-127; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 6 - 239
Target Start/End: Original strand, 31173704 - 31173937
Alignment:
Q  6 gaagataaaaacgtcatttttatatgtcaatatgacgttttgaacgtcatttattaggtgagtttaatttgttgataagccttttgtgcatcacatgtta 105  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31173704 gaagataaaaacgtcatttttatatgtcaatatgacgttttgaacgtcatttattaggtgagtttaatttgttgataagccttttgtgcatcacatgtta 31173803  T
Q  106 atacacctccttggacttcttggatatgtgtgtatcacgtgttgttgttgaagcaattcaacgtgttgaaaatgtgtttggaagtaaatttggaggactg 205  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31173804 atacacctccttggacttcttggatttgtgtgtatcacgtgttgttgttgaagcaattcaacgtgttgaaaatgtgtttggaagtaaatttggaggactg 31173903  T
Q  206 ttactagtttgaatttgtggctttatgtattcat 239  Q
    ||||||||||||||||||||||||||||||||||    
T  31173904 ttactagtttgaatttgtggctttatgtattcat 31173937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 11 - 54
Target Start/End: Complemental strand, 4996473 - 4996430
Alignment:
Q  11 taaaaacgtcatttttatatgtcaatatgacgttttgaacgtca 54  Q
    ||||||||||||||| || |||||||||||||||||||| ||||    
T  4996473 taaaaacgtcattttcatgtgtcaatatgacgttttgaatgtca 4996430  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 161 - 228
Target Start/End: Original strand, 31175301 - 31175368
Alignment:
Q  161 attcaacgtgttgaaaatgtgtttggaagtaaatttggaggactgttactagtttgaatttgtggctt 228  Q
    ||||||||| ||| ||||||| ||||||||||| |||||||| || | |||||||| ||| |||||||    
T  31175301 attcaacgtattggaaatgtgattggaagtaaaattggaggattgcttctagtttgcattcgtggctt 31175368  T

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Target: chr8 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 6 - 54
Target Start/End: Complemental strand, 44006444 - 44006396
Alignment:
Q  6 gaagataaaaacgtcatttttatatgtcaatatgacgttttgaacgtca 54  Q
    |||||||||||||||||||| |||||||||||||| |||||||| ||||    
T  44006444 gaagataaaaacgtcattttcatatgtcaatatgaagttttgaatgtca 44006396  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 9 - 54
Target Start/End: Original strand, 44007567 - 44007612
Alignment:
Q  9 gataaaaacgtcatttttatatgtcaatatgacgttttgaacgtca 54  Q
    |||||||||||||||| ||||||||||||||| |||||||| ||||    
T  44007567 gataaaaacgtcatttctatatgtcaatatgatgttttgaatgtca 44007612  T

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Target: chr4 (Bit Score: 35; Significance: 0.00000000009; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 8 - 54
Target Start/End: Complemental strand, 53687761 - 53687715
Alignment:
Q  8 agataaaaacgtcatttttatatgtcaatatgacgttttgaacgtca 54  Q
    ||||||||| ||||||||||| |||||||||||||||||||| ||||    
T  53687761 agataaaaatgtcatttttatgtgtcaatatgacgttttgaatgtca 53687715  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 11 - 54
Target Start/End: Complemental strand, 55246028 - 55245985
Alignment:
Q  11 taaaaacgtcatttttatatgtcaatatgacgttttgaacgtca 54  Q
    ||||||||||||||  || |||||||||||||||||||||||||    
T  55246028 taaaaacgtcatttccatgtgtcaatatgacgttttgaacgtca 55245985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 9 - 54
Target Start/End: Original strand, 55246557 - 55246602
Alignment:
Q  9 gataaaaacgtcatttttatatgtcaatatgacgttttgaacgtca 54  Q
    |||||||| ||||||| ||||||| |||||||||||||||| ||||    
T  55246557 gataaaaatgtcatttctatatgtaaatatgacgttttgaatgtca 55246602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 11 - 54
Target Start/End: Original strand, 4222796 - 4222839
Alignment:
Q  11 taaaaacgtcatttttatatgtcaatatgacgttttgaacgtca 54  Q
    ||||||||||||||| || |||||||||||||||||||| ||||    
T  4222796 taaaaacgtcattttcatgtgtcaatatgacgttttgaaggtca 4222839  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 54
Target Start/End: Original strand, 40658306 - 40658352
Alignment:
Q  8 agataaaaacgtcatttttatatgtcaatatgacgttttgaacgtca 54  Q
    |||||||||  |||||||||| |||||||||||||||||||| ||||    
T  40658306 agataaaaagatcatttttatgtgtcaatatgacgttttgaatgtca 40658352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 9 - 54
Target Start/End: Original strand, 37560771 - 37560816
Alignment:
Q  9 gataaaaacgtcatttttatatgtcaatatgacgttttgaacgtca 54  Q
    |||||||| |||||||  ||||||||||||||||||||||| ||||    
T  37560771 gataaaaatgtcatttcaatatgtcaatatgacgttttgaatgtca 37560816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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