View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11847_high_5 (Length: 602)
Name: NF11847_high_5
Description: NF11847
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11847_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 497; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 497; E-Value: 0
Query Start/End: Original strand, 22 - 592
Target Start/End: Complemental strand, 40835494 - 40834920
Alignment:
| Q |
22 |
ttacaattatctaataaagttattttggcaccttcatttccatgatcaaaatatggtagtaattgttgaatgtttcttttttctggatgtgatgattgtg |
121 |
Q |
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| T |
40835494 |
ttacaattatctaataaagttattttggcaccttcatttccatgatcaaaatatggtagtaattgttgaatgtttcttttttctggatatgatgattgtg |
40835395 |
T |
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| Q |
122 |
attttgtcacatttcaaatttagtaatcatattgtctatacaatttatttatttatgatgatgcagattgaaaaagggtggaaccagctttttgtttcta |
221 |
Q |
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| T |
40835394 |
attttgtcacatttcaaatttagtaatcatattgtctatacaatttatttatttatgatgatgcagattgaaaaagggtggaaccagctttttgtttcta |
40835295 |
T |
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| Q |
222 |
ttatttgtatagaaactggggaaaccatagccaagtctggcaaagcattagtaaaaaatggagagtgtgattgggaagactctatgttaagtaccatttg |
321 |
Q |
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| T |
40835294 |
ttatttgtatagaaactggggaaaccatagccaagtctggcaaagcattagtaaaaaatggagagtgtgattgggaagactctatgttaagtaccatttg |
40835195 |
T |
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| Q |
322 |
gatttctgattattctctacaagataatcaagcctgcctccttaagcttcttgtagcaatggtttgtttttgttcataaaacttcacattttcttttatn |
421 |
Q |
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| T |
40835194 |
gatttctgattattctctacaagataatcaagcctgccttcttaagcttcttgtagcaatggtttgtttttgttcataaaacttcacattttcttttgt- |
40835096 |
T |
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| Q |
422 |
nnnnnnnnnnnnncaacttcaaaaatagaaggaacactaaatatattctgaaatgag-----tcgtatggctttgtgataatgcagggatctcccaggtt |
516 |
Q |
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| T |
40835095 |
aaaaaagaaaaaacaacttcaaaaatagaaggaacactaaatatattctgaaatgagtcgtatcgtatggctttgtgataatgcagggatctcccaggtt |
40834996 |
T |
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| Q |
517 |
tgggacccttggcgaagctaccattaatttatcaagttacattgggcaagaaacatttactgcatcattgcctttg |
592 |
Q |
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| T |
40834995 |
tgggacccttggcgaagctaccattaatttatcaagttacattgggcaagaaacatttactgcatcattgcctttg |
40834920 |
T |
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