View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11847_high_8 (Length: 502)
Name: NF11847_high_8
Description: NF11847
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11847_high_8 |
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Alignment Details
Target: chr8 (Bit Score: 252; Significance: 1e-140; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 1 - 260
Target Start/End: Complemental strand, 36903364 - 36903105
Alignment:
| Q |
1 |
agaagtgagagtaacgaacgaacctgtcgagacagaaattgagaagagctccaaggaaaaactcggttcgatgaggatcgggtttgagaagatcggcaaa |
100 |
Q |
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| T |
36903364 |
agaagtgagagtaacgaacgaacctgtcgagacagaaattgagaagagctccaaggaaaaactcggttcgatgaggatcgggtttgagaagatcggcaaa |
36903265 |
T |
|
| Q |
101 |
gttaaatgtgtatttcttaggacattcaagtaagttaagcatttccttgatcttgttataaagcttgatagcatgaatagatccaacgtgaagatcggga |
200 |
Q |
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| T |
36903264 |
gttaaatgtgtatttcttaggacattcaagtaagttaagcatttccttgatcttgttgtaaagcttgatagcatgaatagatccaacgtgaaggtcggga |
36903165 |
T |
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| Q |
201 |
ttctcgagatgctctagtgcatcgaaatcaagctgtccgttgtcttcgctgtgagaaatt |
260 |
Q |
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| T |
36903164 |
ttctcgagatgctctagtgcatcgaaatcaagctgtccgttgtcttcgctgtgagaaatt |
36903105 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 327 - 481
Target Start/End: Complemental strand, 36903049 - 36902895
Alignment:
| Q |
327 |
gatagttactcgtggagaaaatcgaggtagttgaggatgcgagtgtagagatccaaaacgacgccggttctggggttggagatgtcgttgtctgtaacgg |
426 |
Q |
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| T |
36903049 |
gatagttactcgtggagaaaatcgaggtagttgaggatgcgagtgtagagatccaaaacgacgccggttctggggttggagatgtcgttctctgtaacgg |
36902950 |
T |
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| Q |
427 |
tagcaatttgaaagttgtttaggagttgaactatttctggccggcgaagccttgg |
481 |
Q |
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| T |
36902949 |
tagcaatttgaaagttgtttaggagttgaactatttctggccggcgaagccttgg |
36902895 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 33 - 259
Target Start/End: Original strand, 36892200 - 36892426
Alignment:
| Q |
33 |
cagaaattgagaagagctccaaggaaaaactcggttcgatgaggatcgggtttgagaagatcggcaaagttaaatgtgtatttcttaggacattcaagta |
132 |
Q |
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|||||| ||||||| || || ||||||||||| |||||| ||||||| |||||||||||||| |||||||| |||| ||||||| |||||||||||| |
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| T |
36892200 |
cagaaactgagaagtgcaccgaggaaaaactcagttcgacgaggatcaggtttgagaagatcagcaaagttgaatgaatatttctgaggacattcaagag |
36892299 |
T |
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| Q |
133 |
agttaagcatttccttgatcttgttataaagcttgatagcatgaatagatccaacgtgaagatcgggattctcgagatgctctagtgcatcgaaatcaag |
232 |
Q |
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| T |
36892300 |
cattaagcatttctatgatcttgttgtacagcttaataacaggaaccgctccaacgtgaagatcgggattctcaagatgctctagggcattgaactcaag |
36892399 |
T |
|
| Q |
233 |
ctgtccgttgtcttcgctgtgagaaat |
259 |
Q |
| |
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|||| ||| || ||| ||||||||||| |
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| T |
36892400 |
ctgttcgtcgtattccctgtgagaaat |
36892426 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 100; Significance: 3e-49; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 17 - 232
Target Start/End: Original strand, 17480321 - 17480536
Alignment:
| Q |
17 |
aacgaacctgtcgagacagaaattgagaagagctccaaggaaaaactcggttcgatgaggatcgggtttgagaagatcggcaaagttaaatgtgtatttc |
116 |
Q |
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|||||||||||| |||||||||||||||||||| || || || |||||||| ||||||||||| || || | |||||| || |||||||| ||||||||| |
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| T |
17480321 |
aacgaacctgtccagacagaaattgagaagagcaccgagaaagaactcggtacgatgaggatcaggcttaacaagatcagccaagttaaacgtgtatttc |
17480420 |
T |
|
| Q |
117 |
ttaggacattcaagtaagttaagcatttccttgatcttgttataaagcttgatagcatgaatagatccaacgtgaagatcgggattctcgagatgctcta |
216 |
Q |
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|||||||||||||| |||||||||||||||||||| ||||| | ||||||| || ||| ||||||||||||||||| ||||| ||||||||||| | |
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| T |
17480421 |
ttaggacattcaagagtattaagcatttccttgatcttattatacaccttgataacaggaaccgatccaacgtgaagatcaggattttcgagatgctcaa |
17480520 |
T |
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| Q |
217 |
gtgcatcgaaatcaag |
232 |
Q |
| |
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||||| ||||||||| |
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| T |
17480521 |
ctgcattgaaatcaag |
17480536 |
T |
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