View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11847_low_14 (Length: 312)
Name: NF11847_low_14
Description: NF11847
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11847_low_14 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 288; Significance: 1e-161; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 1 - 312
Target Start/End: Complemental strand, 41654188 - 41653877
Alignment:
| Q |
1 |
atcctttgcttatccctttgtcatctcgcataatctttgcagaagttatagtgccgcatacactaaagtgatctctcagtccttcatcactaacattgtc |
100 |
Q |
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| T |
41654188 |
atcctttgcttatccctttgtcatctcgcataatctttgcagaagttatagtgccacatacactaaagtgatctctcagtccttcatcactaacattgtc |
41654089 |
T |
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| Q |
101 |
atcaatattcttcacataaatgtttgacccctggaagttaaaggatgaccccataagacaattgcagagaaattggctggttaaatattggagagtggta |
200 |
Q |
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| T |
41654088 |
atcaatattcttcacataaatgtttgacccctggaagttaaaggatgaccccataagacaattgcagagaaattggctggttaaatattggagagtggta |
41653989 |
T |
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| Q |
201 |
aataaattaccttatatttcaagacttgttcctttcgtttctcttcgaattgctggtgcaagatctgctcacgctcagccttcttttgtgccctggcgac |
300 |
Q |
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| T |
41653988 |
aataaattaccttatatttcaagacttgttcctttcgtttctcttcaaattgctggtgcaagatctgctcacgctcagccttcttctgtgccctggctac |
41653889 |
T |
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| Q |
301 |
ctccagaatctt |
312 |
Q |
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| T |
41653888 |
atacagaatctt |
41653877 |
T |
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Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 101 - 142
Target Start/End: Original strand, 27026916 - 27026957
Alignment:
| Q |
101 |
atcaatattcttcacataaatgtttgacccctggaagttaaa |
142 |
Q |
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| T |
27026916 |
atcaatgttcttcacataaatgtttgatccctgaaagttaaa |
27026957 |
T |
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