View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11847_low_15 (Length: 311)
Name: NF11847_low_15
Description: NF11847
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11847_low_15 |
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Alignment Details
Target: chr3 (Bit Score: 270; Significance: 1e-151; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 1 - 294
Target Start/End: Original strand, 34304540 - 34304833
Alignment:
| Q |
1 |
aacgagacagccattataagccttgtagaggctctaccggacgagttattggcaaatatagtgggaaaggttgcaactttctcaatggctgatttattca |
100 |
Q |
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| T |
34304540 |
aacgagacagccattataagccttgtagaggctctaccagacgagttattggcaaatatagtgggaaaggttgcaactttctcaatggctgatttattca |
34304639 |
T |
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| Q |
101 |
aaaccacattgagttgcaaagatttttgtaaagctttagaagatcctcatgtttatcaacatgcagcactagataaatttgcattgattccacttgcatg |
200 |
Q |
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| T |
34304640 |
aaaccacattgagttgcaaagatttttgtaaagctttagaagatcctcatgtttatcaacatgcagcactagataaatttgcattgattccacttgcatg |
34304739 |
T |
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| Q |
201 |
gtttaccagtgaaaaggaaacggcgttcttgagtcgttgtagggaaatgggtaatttggaaattatttaccgtgaaggaatggtgcaatatttt |
294 |
Q |
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| T |
34304740 |
gttcaccagtgaaaaggaaaccatgttcttgagtcgttgtagggaaatgggtaatttggagattatttaccgtgaaggaatggtgcaatatttt |
34304833 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 82 - 296
Target Start/End: Complemental strand, 31001616 - 31001405
Alignment:
| Q |
82 |
tcaatggctgatttattcaaaaccacattgagttgcaaagatttttgtaaagctttagaagatcctcatgtttatcaacatgcagcactagataaatttg |
181 |
Q |
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| T |
31001616 |
tcaatggttgatttatgcaaaatcaaattgagttgcaaagattttcttaacattttagcagatctttacgtttatcaacatgcgtcactatataagtttc |
31001517 |
T |
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| Q |
182 |
cattgattccacttgcatggtttaccagtgaaaaggaaacggcgttcttgagtcgttgtagggaaatgggtaatttggaaattatttaccgtgaaggaat |
281 |
Q |
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| T |
31001516 |
ctttgattccacattcatggttcaccgatgaaaaggaaaccacgtttttgatac---gtagggaaaatggtaatttggagattctttatcatgaaggaat |
31001420 |
T |
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| Q |
282 |
ggtgcaatatttttg |
296 |
Q |
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| T |
31001419 |
ggtgcaataattttg |
31001405 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 57; Significance: 8e-24; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 154 - 294
Target Start/End: Original strand, 14572821 - 14572961
Alignment:
| Q |
154 |
tatcaacatgcagcactagataaatttgcattgattccacttgcatggtttaccagtgaaaaggaaacggcgttcttgagtcgttgtagggaaatgggta |
253 |
Q |
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| T |
14572821 |
tatcaacatgcatctttggataagtttgcattaattccacttccatggttcaccgaagaaaaagaaacctcgttcttgagacgttgtagggaaagtggta |
14572920 |
T |
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| Q |
254 |
atttggaaattatttaccgtgaaggaatggtgcaatatttt |
294 |
Q |
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| T |
14572921 |
atttggagattctttatcgtgaaggaatggagcaatatttt |
14572961 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 151 - 293
Target Start/End: Original strand, 49666073 - 49666215
Alignment:
| Q |
151 |
gtttatcaacatgcagcactagataaatttgcattgattccacttgcatggtttaccagtgaaaaggaaacggcgttcttgagtcgttgtagggaaatgg |
250 |
Q |
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| T |
49666073 |
gtttatcaacatgcagctatggataagtttgctttggttccacttccatggttcaccgatgaaaaagaaacctcgttcttgagtcgttgcaaagaaagtg |
49666172 |
T |
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| Q |
251 |
gtaatttggaaattatttaccgtgaaggaatggtgcaatattt |
293 |
Q |
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| T |
49666173 |
gtaacttggagattacttatcgtgaaggaatggtgcaatattt |
49666215 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 151 - 293
Target Start/End: Complemental strand, 50936310 - 50936173
Alignment:
| Q |
151 |
gtttatcaacatgcagcactagataaatttgcattgattccacttgcatggtttaccagtgaaaaggaaacggcgttcttgagtcgttgtagggaaatgg |
250 |
Q |
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||||||||||||||||| | ||||| ||||||||| || | ||||||| ||| |||||| ||||| ||||||| || |||||||| |||| | |
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| T |
50936310 |
gtttatcaacatgcagctatggataagtttgcattggtttc-----catggttcaccgatgaaaaagaaacctcgttctttagccgttgtagagaaagcg |
50936216 |
T |
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| Q |
251 |
gtaatttggaaattatttaccgtgaaggaatggtgcaatattt |
293 |
Q |
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| T |
50936215 |
gtaacttggagattatttatcgtgaaggaatggtgcaatattt |
50936173 |
T |
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