View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11847_low_17 (Length: 277)

Name: NF11847_low_17
Description: NF11847
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11847_low_17
NF11847_low_17
[»] chr7 (15 HSPs)
chr7 (14-266)||(31174038-31174290)
chr7 (44-264)||(45809357-45809584)
chr7 (190-266)||(11469397-11469473)
chr7 (190-255)||(5481067-5481132)
chr7 (44-148)||(304134-304238)
chr7 (44-148)||(2829879-2829983)
chr7 (47-159)||(41532800-41532912)
chr7 (216-266)||(41532983-41533033)
chr7 (216-265)||(5436528-5436577)
chr7 (216-265)||(24026529-24026578)
chr7 (53-131)||(11469254-11469332)
chr7 (216-265)||(1961428-1961477)
chr7 (189-266)||(304008-304087)
chr7 (47-107)||(5480927-5480987)
chr7 (216-258)||(37205457-37205499)
[»] chr2 (15 HSPs)
chr2 (26-119)||(41055494-41055586)
chr2 (99-193)||(41055389-41055483)
chr2 (44-148)||(5380922-5381026)
chr2 (37-154)||(21278987-21279104)
chr2 (216-266)||(21612821-21612871)
chr2 (216-265)||(14950516-14950565)
chr2 (44-148)||(1592618-1592722)
chr2 (47-159)||(21612942-21613054)
chr2 (44-129)||(36314120-36314205)
chr2 (216-248)||(14160493-14160525)
chr2 (52-120)||(19590509-19590577)
chr2 (44-107)||(25280522-25280585)
chr2 (224-258)||(5380804-5380838)
chr2 (224-265)||(10586039-10586080)
chr2 (224-265)||(25280708-25280749)
[»] chr4 (13 HSPs)
chr4 (24-148)||(31940001-31940125)
chr4 (24-146)||(19032572-19032694)
chr4 (216-265)||(21734370-21734419)
chr4 (44-148)||(13770183-13770287)
chr4 (24-120)||(24783138-24783232)
chr4 (190-252)||(30226132-30226194)
chr4 (47-159)||(30226236-30226348)
chr4 (224-266)||(13770371-13770413)
chr4 (216-266)||(23608550-23608600)
chr4 (224-266)||(24783004-24783046)
chr4 (44-265)||(32823184-32823413)
chr4 (224-265)||(8673717-8673758)
chr4 (224-265)||(46722816-46722857)
[»] chr5 (10 HSPs)
chr5 (44-148)||(17172540-17172644)
chr5 (44-120)||(8403849-8403925)
chr5 (197-266)||(42580995-42581064)
chr5 (190-266)||(21361450-21361526)
chr5 (47-159)||(12106044-12106156)
chr5 (196-266)||(17172695-17172767)
chr5 (47-159)||(21361293-21361405)
chr5 (189-266)||(39684544-39684623)
chr5 (218-255)||(12106229-12106266)
chr5 (217-257)||(4408409-4408449)
[»] chr1 (5 HSPs)
chr1 (26-264)||(7493840-7494085)
chr1 (216-265)||(29681744-29681793)
chr1 (216-265)||(48366052-48366101)
chr1 (224-265)||(33409450-33409491)
chr1 (224-265)||(48777541-48777582)
[»] chr3 (5 HSPs)
chr3 (198-263)||(15870752-15870817)
chr3 (49-137)||(40285893-40285981)
chr3 (216-266)||(52725176-52725226)
chr3 (47-120)||(52724993-52725066)
chr3 (224-265)||(30343603-30343644)
[»] chr8 (5 HSPs)
chr8 (44-148)||(2812447-2812551)
chr8 (24-137)||(35816332-35816445)
chr8 (188-258)||(7558864-7558934)
chr8 (224-265)||(2812634-2812675)
chr8 (188-258)||(18606595-18606667)
[»] chr6 (8 HSPs)
chr6 (44-113)||(30383815-30383884)
chr6 (44-148)||(582846-582950)
chr6 (44-129)||(7640131-7640218)
chr6 (224-266)||(30383660-30383702)
chr6 (44-148)||(3886567-3886671)
chr6 (167-266)||(5122086-5122186)
chr6 (188-258)||(3886716-3886788)
chr6 (224-265)||(7640316-7640357)
[»] scaffold0049 (1 HSPs)
scaffold0049 (189-266)||(15633-15712)


Alignment Details
Target: chr7 (Bit Score: 245; Significance: 1e-136; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 14 - 266
Target Start/End: Complemental strand, 31174290 - 31174038
Alignment:
Q  14 gaacattggaaagtcagtttagatcatagacaattatcgatgaatttgagtctttgaaaggtcgtcgagttcgactttcatatataactactattaattt 113  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||    
T  31174290 gaacattggaaagtcagtttagatcatagacaattatcgatgaatttgagtctttgaaagatcgtcgagttcgactttcataaataactactattaattt 31174191  T
Q  114 ttatttccttcgttgttgctttttaggtacaatcctttgttatgttaaaactcttttggtataatccgttgttgttttttcggtataatccgttattgct 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31174190 ttatttccttcgttgttgctttttaggtacaatcctttgttatgttaaaactcttttggtataatccgttgttgttttttcggtataatccgttattgct 31174091  T
Q  214 gttttaagtgtattttatgaagtacattttatataagtaatagttgttgtgaa 266  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31174090 gttttaagtgtattttatgaagtacattttatataagtaatagttgttgtgaa 31174038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 44 - 264
Target Start/End: Complemental strand, 45809584 - 45809357
Alignment:
Q  44 caattatcgatgaatttgagtctttgaaaggtcgtcgagttcgactttcatatataactactattaatttttatttccttcgttgttgctttttaggtac 143  Q
    ||||||| |||||||||||||||||||| || || ||||||| | ||||||| ||| ||||||||| |||||||||| || ||||| ||||||| |||||    
T  45809584 caattatggatgaatttgagtctttgaagggccgccgagttcaattttcataaatagctactattagtttttatttcttttgttgtagcttttttggtac 45809485  T
Q  144 aatcctttgttatgttaaaactcttttggtataatccgttgttg-----ttttttcggtataatccgttattgctgttttaagtg--tattttatgaagt 236  Q
    ||||| || || |  |    || |||||||| |||| |||||||     |||||| |||||||||||||  || ||  | |||||  ||||||||||||     
T  45809484 aatccgtttttctactgtgtcttttttggtacaatctgttgttgccgcatttttttggtataatccgttcatgttgaatcaagtgtatattttatgaaga 45809385  T
Q  237 acattttatataagtaatagttgttgtg 264  Q
    |||||||||||||||||||||| |||||    
T  45809384 acattttatataagtaatagttattgtg 45809357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 190 - 266
Target Start/End: Original strand, 11469397 - 11469473
Alignment:
Q  190 ttttcggtataatccgttattgctgttttaagtgtattttatgaagtacattttatataagtaatagttgttgtgaa 266  Q
    |||| |||||||||| || ||  |||||||||||||||||||||||||||||||||||| |||||| || |||||||    
T  11469397 tttttggtataatccttttttattgttttaagtgtattttatgaagtacattttatatacgtaatatttattgtgaa 11469473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 190 - 255
Target Start/End: Original strand, 5481067 - 5481132
Alignment:
Q  190 ttttcggtataatccgttattgctgttttaagtgtattttatgaagtacattttatataagtaata 255  Q
    |||| |||||||||| || ||  || ||||||||||||||||||||||||||||||||||||||||    
T  5481067 tttttggtataatccttttttattgctttaagtgtattttatgaagtacattttatataagtaata 5481132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 44 - 148
Target Start/End: Complemental strand, 304238 - 304134
Alignment:
Q  44 caattatcgatgaatttgagtctttgaaaggtcgtcgagttcgactttcatatataactactattaatttttatttccttcgttgttgctttttaggtac 143  Q
    ||||||| |||||||||||||||||||| || || |||||||   ||| | | ||| ||||||||| |||||||||| || ||||| ||||||| |||||    
T  304238 caattatggatgaatttgagtctttgaagggccgacgagttcatttttaaaaaatagctactattagtttttatttcttttgttgtagcttttttggtac 304139  T
Q  144 aatcc 148  Q
    |||||    
T  304138 aatcc 304134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 44 - 148
Target Start/End: Original strand, 2829879 - 2829983
Alignment:
Q  44 caattatcgatgaatttgagtctttgaaaggtcgtcgagttcgactttcatatataactactattaatttttatttccttcgttgttgctttttaggtac 143  Q
    ||||||| |||||||||||||||||||| || || |||||||   ||| | | ||| ||||||||| |||||||||| || ||||| ||||||| |||||    
T  2829879 caattatggatgaatttgagtctttgaagggccgacgagttcatttttaaaaaatagctactattagtttttatttcttttgttgtagcttttttggtac 2829978  T
Q  144 aatcc 148  Q
    |||||    
T  2829979 aatcc 2829983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 47 - 159
Target Start/End: Original strand, 41532800 - 41532912
Alignment:
Q  47 ttatcgatgaatttgagtctttgaaaggtcgtcgagttcgactttcatatataactactattaatttttatttccttcgttgttgctttttaggtacaat 146  Q
    |||| |||||||||||||||||||| | ||| | |||||||||||| || ||| ||||||| |||||| ||||| | | |||||| |||||| || ||||    
T  41532800 ttatagatgaatttgagtctttgaaggatcgccaagttcgactttcgtaaatagctactatcaattttaatttcttccattgttgatttttacgtgcaat 41532899  T
Q  147 cctttgttatgtt 159  Q
    | |||||| ||||    
T  41532900 catttgttctgtt 41532912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 216 - 266
Target Start/End: Original strand, 41532983 - 41533033
Alignment:
Q  216 tttaagtgtattttatgaagtacattttatataagtaatagttgttgtgaa 266  Q
    ||||||||||||||||||||||||||||||||||||| || || |||||||    
T  41532983 tttaagtgtattttatgaagtacattttatataagtactatttattgtgaa 41533033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 216 - 265
Target Start/End: Complemental strand, 5436577 - 5436528
Alignment:
Q  216 tttaagtgtattttatgaagtacattttatataagtaatagttgttgtga 265  Q
    |||||||||||||||||||||| ||||||||||||||||| || ||||||    
T  5436577 tttaagtgtattttatgaagtagattttatataagtaatatttattgtga 5436528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 216 - 265
Target Start/End: Complemental strand, 24026578 - 24026529
Alignment:
Q  216 tttaagtgtattttatgaagtacattttatataagtaatagttgttgtga 265  Q
    |||||||||||||||| |||||||||||||||||  ||||||||||||||    
T  24026578 tttaagtgtattttataaagtacattttatataaaaaatagttgttgtga 24026529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 53 - 131
Target Start/End: Original strand, 11469254 - 11469332
Alignment:
Q  53 atgaatttgagtctttgaaaggtcgtcgagttcgactttcatatataactactattaatttttatttccttcgttgttg 131  Q
    ||||||||||||||||||||| | ||| ||||||||||||||| |||  || ||||| |||| ||||| ||| ||||||    
T  11469254 atgaatttgagtctttgaaagattgtcaagttcgactttcataaataggtattattagttttaatttctttcattgttg 11469332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 216 - 265
Target Start/End: Original strand, 1961428 - 1961477
Alignment:
Q  216 tttaagtgtattttatgaagtacattttatataagtaatagttgttgtga 265  Q
    ||||| |||| ||||| |||||||||||||||||| ||||||||||||||    
T  1961428 tttaattgtagtttataaagtacattttatataagaaatagttgttgtga 1961477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 189 - 266
Target Start/End: Complemental strand, 304087 - 304008
Alignment:
Q  189 tttttcggtataatccgttattgctgttttaagtgtat--tttatgaagtacattttatataagtaatagttgttgtgaa 266  Q
    ||||| ||||||||||||| ||| ||  | ||||||||  ||||||||| || ||||||||||||||||||| |||||||    
T  304087 ttttttggtataatccgttcttgttgaatcaagtgtatattttatgaagaacgttttatataagtaatagttattgtgaa 304008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 47 - 107
Target Start/End: Original strand, 5480927 - 5480987
Alignment:
Q  47 ttatcgatgaatttgagtctttgaaaggtcgtcgagttcgactttcatatataactactat 107  Q
    |||| ||||||||||||||||| || | | ||||||||||||||||||| ||| |||||||    
T  5480927 ttatggatgaatttgagtctttcaaggattgtcgagttcgactttcataaatagctactat 5480987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 216 - 258
Target Start/End: Complemental strand, 37205499 - 37205457
Alignment:
Q  216 tttaagtgtattttatgaagtacattttatataagtaatagtt 258  Q
    |||||||||||||||||||||| ||||||||||  ||||||||    
T  37205499 tttaagtgtattttatgaagtatattttatatacataatagtt 37205457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 62; Significance: 8e-27; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 26 - 119
Target Start/End: Complemental strand, 41055586 - 41055494
Alignment:
Q  26 gtcagtttagatcatagacaattatcgatgaatttgagtctttgaaaggtcgtcgagttcgactttcatatataactactattaatttttattt 119  Q
    |||||||||| |||||||||||||| ||||||||||||||||| ||||||||| |||||||||||||||| ||| |||||||| ||||||||||    
T  41055586 gtcagtttagctcatagacaattatggatgaatttgagtctttaaaaggtcgttgagttcgactttcataaatagctactatt-atttttattt 41055494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 99 - 193
Target Start/End: Complemental strand, 41055483 - 41055389
Alignment:
Q  99 aactactattaatttttatttccttcgttgttgctttttaggtacaatcctttgttatgttaaaactcttttggtataatccgttgttgtttttt 193  Q
    ||||||||||| |||||| |||||| ||||||||||||||||||||||| |||||||||||||  || |||||||| ||| |||| || ||||||    
T  41055483 aactactattagtttttagttcctttgttgttgctttttaggtacaatcatttgttatgttaatgcttttttggtacaattcgtttttttttttt 41055389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 44 - 148
Target Start/End: Complemental strand, 5381026 - 5380922
Alignment:
Q  44 caattatcgatgaatttgagtctttgaaaggtcgtcgagttcgactttcatatataactactattaatttttatttccttcgttgttgctttttaggtac 143  Q
    ||||||| |||||||||||||||||||| || || ||||||| | ||||||| ||| | ||||||| |||||||||| || ||||| ||||||| |||||    
T  5381026 caattatggatgaatttgagtctttgaagggccgacgagttcaattttcataaatagccactattagtttttatttcttttgttgtagcttttttggtac 5380927  T
Q  144 aatcc 148  Q
    |||||    
T  5380926 aatcc 5380922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 37 - 154
Target Start/End: Original strand, 21278987 - 21279104
Alignment:
Q  37 tcatagacaattatcgatgaatttgagtctttgaaaggtcgtcgagttcgactttcatatataactactattaatttttatttccttcgttgttgctttt 136  Q
    |||||| || |||| ||||||||||||| |||||| | ||||||||||||||||| ||| ||| ||||||| | |||| ||||| | | |||||| ||||    
T  21278987 tcataggcacttatggatgaatttgagtatttgaaggatcgtcgagttcgacttttataaatagctactatcagttttaatttcttacattgttgatttt 21279086  T
Q  137 taggtacaatcctttgtt 154  Q
    || |||||||| ||||||    
T  21279087 tacgtacaatcatttgtt 21279104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 216 - 266
Target Start/End: Complemental strand, 21612871 - 21612821
Alignment:
Q  216 tttaagtgtattttatgaagtacattttatataagtaatagttgttgtgaa 266  Q
    ||||||||||||||||||||||||||||||||||||| || || |||||||    
T  21612871 tttaagtgtattttatgaagtacattttatataagtactatttattgtgaa 21612821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 216 - 265
Target Start/End: Complemental strand, 14950565 - 14950516
Alignment:
Q  216 tttaagtgtattttatgaagtacattttatataagtaatagttgttgtga 265  Q
    |||| |||||||||||||||||||||||||||| |||||||| |||||||    
T  14950565 tttaggtgtattttatgaagtacattttatatatgtaatagtcgttgtga 14950516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 44 - 148
Target Start/End: Complemental strand, 1592722 - 1592618
Alignment:
Q  44 caattatcgatgaatttgagtctttgaaaggtcgtcgagttcgactttcatatataactactattaatttttatttccttcgttgttgctttttaggtac 143  Q
    ||||||| |||||||||||||||||||| || || ||||||| | |||||||  || ||| ||||| ||||||| || || ||||| ||||||| | |||    
T  1592722 caattatggatgaatttgagtctttgaagggccgccgagttcaattttcataagtagctattattagtttttatatcttttgttgtagcttttttgatac 1592623  T
Q  144 aatcc 148  Q
    |||||    
T  1592622 aatcc 1592618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 47 - 159
Target Start/End: Complemental strand, 21613054 - 21612942
Alignment:
Q  47 ttatcgatgaatttgagtctttgaaaggtcgtcgagttcgactttcatatataactactattaatttttatttccttcgttgttgctttttaggtacaat 146  Q
    |||| |||||||||||||||||||| | ||| | |||||||||||| || ||| ||||||| |||||| ||||| | | |||| | |||||| || ||||    
T  21613054 ttatagatgaatttgagtctttgaaggatcgccaagttcgactttcgtaaatagctactatcaattttaatttcttccattgtcgatttttacgtgcaat 21612955  T
Q  147 cctttgttatgtt 159  Q
    | |||||| ||||    
T  21612954 catttgttctgtt 21612942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 44 - 129
Target Start/End: Complemental strand, 36314205 - 36314120
Alignment:
Q  44 caattatcgatgaatttgagtctttgaaaggtcgtcgagttcgactttcatatataactactattaatttttatttccttcgttgt 129  Q
    ||||||| |||||||||||||||||||| || || ||||||| | |||||||  || ||| ||||| |||||||||| || |||||    
T  36314205 caattatggatgaatttgagtctttgaagggccgccgagttcaattttcataagtagctattattagtttttatttcttttgttgt 36314120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 216 - 248
Target Start/End: Complemental strand, 14160525 - 14160493
Alignment:
Q  216 tttaagtgtattttatgaagtacattttatata 248  Q
    |||||||||||||||||||||||||||||||||    
T  14160525 tttaagtgtattttatgaagtacattttatata 14160493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 52 - 120
Target Start/End: Complemental strand, 19590577 - 19590509
Alignment:
Q  52 gatgaatttgagtctttgaaaggtcgtcgagttcgactttcatatataactactattaatttttatttc 120  Q
    ||||||||||||| |||||| |||| |||||||| | ||||||| |||  |||||||| ||||||||||    
T  19590577 gatgaatttgagtttttgaagggtcttcgagttcaattttcataaatagttactattagtttttatttc 19590509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 44 - 107
Target Start/End: Original strand, 25280522 - 25280585
Alignment:
Q  44 caattatcgatgaatttgagtctttgaaaggtcgtcgagttcgactttcatatataactactat 107  Q
    ||||||| |||||||||||||||||||| ||| ||||||||| | ||| ||| ||| |||||||    
T  25280522 caattatggatgaatttgagtctttgaagggtggtcgagttcaatttttataaatagctactat 25280585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 224 - 258
Target Start/End: Complemental strand, 5380838 - 5380804
Alignment:
Q  224 tattttatgaagtacattttatataagtaatagtt 258  Q
    |||||||||||| ||||||||||||||||||||||    
T  5380838 tattttatgaagaacattttatataagtaatagtt 5380804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 224 - 265
Target Start/End: Original strand, 10586039 - 10586080
Alignment:
Q  224 tattttatgaagtacattttatataagtaatagttgttgtga 265  Q
    |||||||||||| ||||||||||||||||||| || ||||||    
T  10586039 tattttatgaagaacattttatataagtaataattattgtga 10586080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 224 - 265
Target Start/End: Original strand, 25280708 - 25280749
Alignment:
Q  224 tattttatgaagtacattttatataagtaatagttgttgtga 265  Q
    |||||||||||| ||||||||||||||||||| || ||||||    
T  25280708 tattttatgaagaacattttatataagtaataattattgtga 25280749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 61; Significance: 3e-26; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 24 - 148
Target Start/End: Complemental strand, 31940125 - 31940001
Alignment:
Q  24 aagtcagtttagatcatagacaattatcgatgaatttgagtctttgaaaggtcgtcgagttcgactttcatatataactactattaatttttatttcctt 123  Q
    |||||||||||| ||| |  ||||||| |||||||||||||||||||| ||||||||||||| | ||||||| ||| ||||||||| |||||||||| ||    
T  31940125 aagtcagtttagctcagatgcaattatggatgaatttgagtctttgaagggtcgtcgagttcaattttcataaatagctactattagtttttatttcttt 31940026  T
Q  124 cgttgttgctttttaggtacaatcc 148  Q
     ||||| |||||||  |||||||||    
T  31940025 tgttgtagctttttttgtacaatcc 31940001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 24 - 146
Target Start/End: Complemental strand, 19032694 - 19032572
Alignment:
Q  24 aagtcagtttagatcatagacaattatcgatgaatttgagtctttgaaaggtcgtcgagttcgactttcatatataactactattaatttttatttcctt 123  Q
    |||||||||||| ||| |  ||||||| ||||||||||||| |||||| |||||  |||||| | ||||||||||| ||||||||| |||||||||| ||    
T  19032694 aagtcagtttagctcagatgcaattatggatgaatttgagtgtttgaagggtcgctgagttcaattttcatatatagctactattagtttttatttcttt 19032595  T
Q  124 cgttgttgctttttaggtacaat 146  Q
     ||||| | ||||| ||||||||    
T  19032594 tgttgtagattttttggtacaat 19032572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 216 - 265
Target Start/End: Original strand, 21734370 - 21734419
Alignment:
Q  216 tttaagtgtattttatgaagtacattttatataagtaatagttgttgtga 265  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21734370 tttaagtgtattttatgaagtacattttatataagtaatagttgttgtga 21734419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 44 - 148
Target Start/End: Original strand, 13770183 - 13770287
Alignment:
Q  44 caattatcgatgaatttgagtctttgaaaggtcgtcgagttcgactttcatatataactactattaatttttatttccttcgttgttgctttttaggtac 143  Q
    ||||||| |||||||||||||||||||| || || ||| ||| | ||||||| ||| ||||||||| |||||||||| || ||||| ||||||| |||||    
T  13770183 caattatggatgaatttgagtctttgaagggccgacgaattcaattttcataaatagctactattagtttttatttcttttgttgtagcttttttggtac 13770282  T
Q  144 aatcc 148  Q
    |||||    
T  13770283 aatcc 13770287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 24 - 120
Target Start/End: Complemental strand, 24783232 - 24783138
Alignment:
Q  24 aagtcagtttagatcatagacaattatcgatgaatttgagtctttgaaaggtcgtcgagttcgactttcatatataactactattaatttttatttc 120  Q
    |||||||||||| ||||   ||||||| |||||||||||||||||||| ||||| ||||||||| ||||||| ||| ||||||||| ||||| ||||    
T  24783232 aagtcagtttagctcatg--caattatggatgaatttgagtctttgaatggtcgccgagttcgattttcataaatagctactattagtttttgtttc 24783138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 190 - 252
Target Start/End: Complemental strand, 30226194 - 30226132
Alignment:
Q  190 ttttcggtataatccgttattgctgttttaagtgtattttatgaagtacattttatataagta 252  Q
    |||| |||||||||| || ||  || |||||||||||||||||||||||||||||||||||||    
T  30226194 tttttggtataatcccttcttattgctttaagtgtattttatgaagtacattttatataagta 30226132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 47 - 159
Target Start/End: Complemental strand, 30226348 - 30226236
Alignment:
Q  47 ttatcgatgaatttgagtctttgaaaggtcgtcgagttcgactttcatatataactactattaatttttatttccttcgttgttgctttttaggtacaat 146  Q
    |||| |||||||||||||||||||| | ||| | |||||||||||| || ||| ||||||| |||||| ||||| | | |||| | |||||| || ||||    
T  30226348 ttatagatgaatttgagtctttgaaggatcgccaagttcgactttcgtaaatagctactatcaattttaatttcttccattgtcgatttttacgtgcaat 30226249  T
Q  147 cctttgttatgtt 159  Q
    | |||||| ||||    
T  30226248 catttgttctgtt 30226236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 224 - 266
Target Start/End: Original strand, 13770371 - 13770413
Alignment:
Q  224 tattttatgaagtacattttatataagtaatagttgttgtgaa 266  Q
    |||||||||||| |||||||||||||||||||||| |||||||    
T  13770371 tattttatgaagaacattttatataagtaatagttattgtgaa 13770413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 216 - 266
Target Start/End: Complemental strand, 23608600 - 23608550
Alignment:
Q  216 tttaagtgtattttatgaagtacattttatataagtaatagttgttgtgaa 266  Q
    ||||| ||||||||||||||| |||||||||||| |||||||| |||||||    
T  23608600 tttaaatgtattttatgaagtgcattttatataattaatagttattgtgaa 23608550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 224 - 266
Target Start/End: Complemental strand, 24783046 - 24783004
Alignment:
Q  224 tattttatgaagtacattttatataagtaatagttgttgtgaa 266  Q
    |||||||||||| |||||||||||||||||||||| |||||||    
T  24783046 tattttatgaagaacattttatataagtaatagttattgtgaa 24783004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 44 - 265
Target Start/End: Complemental strand, 32823413 - 32823184
Alignment:
Q  44 caattatcgatgaatttgagtctttgaaaggtcgtcgagttcgactttcatatataactactattaatttttatttccttcgttgttgctttttaggtac 143  Q
    ||||||| ||||||||| ||||||| ||||| || ||||||  | | ||||| ||| ||||||||| |||||||||| || ||||  ||||||| |||||    
T  32823413 caattatggatgaattttagtctttaaaaggccgccgagtttaattatcataaatagctactattagtttttatttcttttgttggagcttttttggtac 32823314  T
Q  144 aatcctttgttatgttaaaactcttttggtataatccgttgttg-----ttttttcggtataatc-cgttattgctgttttaagtgtat--tttatgaag 235  Q
    |||||  | || |  |    || |||||||| |||| |||||||     |||||||||||||||| ||||  || |   | ||||||||  |||||||||    
T  32823313 aatccgctattctactgtggcttttttggtacaatctgttgttgccgtattttttcggtataatctcgttcatgttaaatcaagtgtatattttatgaag 32823214  T
Q  236 tacattttatataagtaatagttgttgtga 265  Q
     |||||||||||||||||||||| ||||||    
T  32823213 aacattttatataagtaatagttattgtga 32823184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 224 - 265
Target Start/End: Original strand, 8673717 - 8673758
Alignment:
Q  224 tattttatgaagtacattttatataagtaatagttgttgtga 265  Q
    |||||||||||  |||||||||||||||||||||| ||||||    
T  8673717 tattttatgaacaacattttatataagtaatagttattgtga 8673758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 224 - 265
Target Start/End: Original strand, 46722816 - 46722857
Alignment:
Q  224 tattttatgaagtacattttatataagtaatagttgttgtga 265  Q
    |||||||||||| ||||||||||||||||||| || ||||||    
T  46722816 tattttatgaagaacattttatataagtaataattattgtga 46722857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 53; Significance: 2e-21; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 44 - 148
Target Start/End: Original strand, 17172540 - 17172644
Alignment:
Q  44 caattatcgatgaatttgagtctttgaaaggtcgtcgagttcgactttcatatataactactattaatttttatttccttcgttgttgctttttaggtac 143  Q
    ||||||| |||||||||||||||||||| || |||||||||| | ||||||| ||| | ||||||| |||||||||| || ||||| ||||||| |||||    
T  17172540 caattatggatgaatttgagtctttgaagggccgtcgagttcaattttcataaatagccactattagtttttatttcttttgttgtagcttttttggtac 17172639  T
Q  144 aatcc 148  Q
    |||||    
T  17172640 aatcc 17172644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 44 - 120
Target Start/End: Original strand, 8403849 - 8403925
Alignment:
Q  44 caattatcgatgaatttgagtctttgaaaggtcgtcgagttcgactttcatatataactactattaatttttatttc 120  Q
    ||||||| |||||||||||||||||||| ||||| ||||||| | ||||||| ||| ||||||||||||||||||||    
T  8403849 caattatggatgaatttgagtctttgaagggtcgccgagttcaattttcataaatagctactattaatttttatttc 8403925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 197 - 266
Target Start/End: Original strand, 42580995 - 42581064
Alignment:
Q  197 tataatccgttattgctgttttaagtgtattttatgaagtacattttatataagtaatagttgttgtgaa 266  Q
    |||||| |||||||| |||||||| |||||||||||||||||||||||| || ||||||||| |||||||    
T  42580995 tataattcgttattgttgttttaaatgtattttatgaagtacattttatgtacgtaatagttattgtgaa 42581064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 190 - 266
Target Start/End: Original strand, 21361450 - 21361526
Alignment:
Q  190 ttttcggtataatccgttattgctgttttaagtgtattttatgaagtacattttatataagtaatagttgttgtgaa 266  Q
    |||| |||||||||| || ||  || |||||||||||||||||||||||||||||||||||||||| || |||||||    
T  21361450 tttttggtataatcccttcttattgctttaagtgtattttatgaagtacattttatataagtaatatttattgtgaa 21361526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 47 - 159
Target Start/End: Original strand, 12106044 - 12106156
Alignment:
Q  47 ttatcgatgaatttgagtctttgaaaggtcgtcgagttcgactttcatatataactactattaatttttatttccttcgttgttgctttttaggtacaat 146  Q
    |||| |||||||||||||||||||| | ||| |||||||||||||| || ||| ||||||| |||||| ||||| | | |||| | |||||| || ||||    
T  12106044 ttatagatgaatttgagtctttgaaggatcgccgagttcgactttcgtaaatagctactatcaattttaatttcttccattgtcgatttttacgtgcaat 12106143  T
Q  147 cctttgttatgtt 159  Q
    | |||||| ||||    
T  12106144 catttgttctgtt 12106156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 196 - 266
Target Start/End: Original strand, 17172695 - 17172767
Alignment:
Q  196 gtataatccgttattgctgttttaagtgtat--tttatgaagtacattttatataagtaatagttgttgtgaa 266  Q
    ||||||| |||| ||| || || ||||||||  ||||||||| |||||||||||||||||||||| |||||||    
T  17172695 gtataattcgttcttgttggttcaagtgtatattttatgaagaacattttatataagtaatagttattgtgaa 17172767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 47 - 159
Target Start/End: Original strand, 21361293 - 21361405
Alignment:
Q  47 ttatcgatgaatttgagtctttgaaaggtcgtcgagttcgactttcatatataactactattaatttttatttccttcgttgttgctttttaggtacaat 146  Q
    |||| |||||||||||||||||||| | ||| | |||||||||||  || ||| ||||||| |||||| ||||| | | |||| | |||||| || ||||    
T  21361293 ttatagatgaatttgagtctttgaaggatcgccaagttcgacttttgtaaatagctactatcaattttaatttcttccattgtcgatttttacgtgcaat 21361392  T
Q  147 cctttgttatgtt 159  Q
    | |||||| ||||    
T  21361393 catttgttttgtt 21361405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 189 - 266
Target Start/End: Complemental strand, 39684623 - 39684544
Alignment:
Q  189 tttttcggtataatccgttattgctgttttaagtgtat--tttatgaagtacattttatataagtaatagttgttgtgaa 266  Q
    ||||| ||||||||||||| ||| ||  | ||||||||  ||||||||| ||||||||||||||||||| || |||||||    
T  39684623 ttttttggtataatccgttcttgttgaatcaagtgtatattttatgaagaacattttatataagtaataattattgtgaa 39684544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 218 - 255
Target Start/End: Original strand, 12106229 - 12106266
Alignment:
Q  218 taagtgtattttatgaagtacattttatataagtaata 255  Q
    ||||||||||||||||| |||| |||||||||||||||    
T  12106229 taagtgtattttatgaaatacaatttatataagtaata 12106266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 217 - 257
Target Start/End: Complemental strand, 4408449 - 4408409
Alignment:
Q  217 ttaagtgtattttatgaagtacattttatataagtaatagt 257  Q
    |||||||||||||||||||| |||||| ||| |||||||||    
T  4408449 ttaagtgtattttatgaagttcattttgtattagtaatagt 4408409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 51; Significance: 3e-20; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 26 - 264
Target Start/End: Original strand, 7493840 - 7494085
Alignment:
Q  26 gtcagtttagatcatagacaattatcgatgaatttgagtctttgaaaggtcgtcgagttcgactttcatatataactactattaatttttatttccttcg 125  Q
    |||||||||| ||| |  ||||||| ||| |||||||||||||||| ||  | ||||||| | ||||||| ||| ||||||||| |||||||||| || |    
T  7493840 gtcagtttagctcagatgcaattatggataaatttgagtctttgaagggctgccgagttcaattttcataaatagctactattagtttttatttcttttg 7493939  T
Q  126 ttgttgctttttaggtacaatcctttgttatgttaaaactcttttggtataatccgttgttg-----ttttttcggtataatccgttattgctgttttaa 220  Q
    |||| ||||||| |||||||||| || || |       || ||||||||||||| |||||||     |||||| |||||||||||||  || ||  | ||    
T  7493940 ttgtagcttttttggtacaatccgtttttctacggtgtcttttttggtataatctgttgttgccatatttttttggtataatccgttcatgttgaatcaa 7494039  T
Q  221 gtg--tattttatgaagtacattttatataagtaatagttgttgtg 264  Q
    |||  |||||||||||| | |||||||||||||||||||| |||||    
T  7494040 gtgtatattttatgaagaatattttatataagtaatagttattgtg 7494085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 216 - 265
Target Start/End: Original strand, 29681744 - 29681793
Alignment:
Q  216 tttaagtgtattttatgaagtacattttatataagtaatagttgttgtga 265  Q
    |||||||||||||||||||||||||||||||||||||||| || ||||||    
T  29681744 tttaagtgtattttatgaagtacattttatataagtaatatttattgtga 29681793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 216 - 265
Target Start/End: Complemental strand, 48366101 - 48366052
Alignment:
Q  216 tttaagtgtattttatgaagtacattttatataagtaatagttgttgtga 265  Q
    |||||||||||||||||||||||||||||||||||||||| || ||||||    
T  48366101 tttaagtgtattttatgaagtacattttatataagtaatatttattgtga 48366052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 224 - 265
Target Start/End: Complemental strand, 33409491 - 33409450
Alignment:
Q  224 tattttatgaagtacattttatataagtaatagttgttgtga 265  Q
    |||||||||||| |||||||||||||||||||||| ||||||    
T  33409491 tattttatgaagaacattttatataagtaatagttattgtga 33409450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 224 - 265
Target Start/End: Original strand, 48777541 - 48777582
Alignment:
Q  224 tattttatgaagtacattttatataagtaatagttgttgtga 265  Q
    |||||||||||| |||||||||||||||||||||| ||||||    
T  48777541 tattttatgaagaacattttatataagtaatagttattgtga 48777582  T

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Target: chr3 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 198 - 263
Target Start/End: Complemental strand, 15870817 - 15870752
Alignment:
Q  198 ataatccgttattgctgttttaagtgtattttatgaagtacattttatataagtaatagttgttgt 263  Q
    |||||||||| ||| |||||||||| |||||||| ||||||||||||||| |||||||||| ||||    
T  15870817 ataatccgtttttgttgttttaagtatattttataaagtacattttatatcagtaatagttattgt 15870752  T

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Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 49 - 137
Target Start/End: Original strand, 40285893 - 40285981
Alignment:
Q  49 atcgatgaatttgagtctttgaaaggtcgtcgagttcgactttcatatataactactattaatttttatttccttcgttgttgcttttt 137  Q
    |||||||||||||||| ||||||||  | |||||||| | ||||||| ||| ||||||||| |||||||||| || ||||| |||||||    
T  40285893 atcgatgaatttgagtttttgaaagtccatcgagttcaattttcataaatagctactattagtttttatttcttttgttgtagcttttt 40285981  T

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Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 216 - 266
Target Start/End: Original strand, 52725176 - 52725226
Alignment:
Q  216 tttaagtgtattttatgaagtacattttatataagtaatagttgttgtgaa 266  Q
    ||||||||||||||||||||||||||||||||||||| || || |||||||    
T  52725176 tttaagtgtattttatgaagtacattttatataagtactatttattgtgaa 52725226  T

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Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 47 - 120
Target Start/End: Original strand, 52724993 - 52725066
Alignment:
Q  47 ttatcgatgaatttgagtctttgaaaggtcgtcgagttcgactttcatatataactactattaatttttatttc 120  Q
    |||| |||||||||||||||||||| | ||| | |||||||||||| || ||| ||||||| |||||| |||||    
T  52724993 ttatagatgaatttgagtctttgaaggatcgccaagttcgactttcgtaaatagctactatcaattttaatttc 52725066  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 224 - 265
Target Start/End: Original strand, 30343603 - 30343644
Alignment:
Q  224 tattttatgaagtacattttatataagtaatagttgttgtga 265  Q
    |||||||||||| ||||||||||||||||||| || ||||||    
T  30343603 tattttatgaagaacattttatataagtaataattattgtga 30343644  T

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Target: chr8 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 44 - 148
Target Start/End: Original strand, 2812447 - 2812551
Alignment:
Q  44 caattatcgatgaatttgagtctttgaaaggtcgtcgagttcgactttcatatataactactattaatttttatttccttcgttgttgctttttaggtac 143  Q
    ||||||| ||||||||||||||||||||  | |  ||||||| | ||||||| ||| |||||||||||||||||||| || ||||| | ||||| ||||     
T  2812447 caattatggatgaatttgagtctttgaagagccaccgagttcaattttcataaatagctactattaatttttatttcttttgttgtagtttttttggtat 2812546  T
Q  144 aatcc 148  Q
    |||||    
T  2812547 aatcc 2812551  T

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Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 24 - 137
Target Start/End: Complemental strand, 35816445 - 35816332
Alignment:
Q  24 aagtcagtttagatcatagacaattatcgatgaatttgagtctttgaaaggtcgtcgagttcgactttcatatataactactattaatttttatttcctt 123  Q
    |||||||||||  | | |||| |||||| |||| |||||||||||||||| || ||||||| ||||| |||| |||  |||||| ||||||||| |||||    
T  35816445 aagtcagtttaacttagagaccattatcaatgagtttgagtctttgaaagatcatcgagtttgacttccataaatagttactatcaatttttatatcctt 35816346  T
Q  124 cgttgttgcttttt 137  Q
      |||||| |||||    
T  35816345 tattgttgtttttt 35816332  T

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Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 188 - 258
Target Start/End: Complemental strand, 7558934 - 7558864
Alignment:
Q  188 ttttttcggtataatccgttattgctgttttaagtgtattttatgaagtacattttatataagtaatagtt 258  Q
    |||||| |||||||| | || ||| || ||||||||||||||||||| |||||||| ||| ||||||||||    
T  7558934 tttttttggtataattcattcttgttgctttaagtgtattttatgaaatacattttgtattagtaatagtt 7558864  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 224 - 265
Target Start/End: Original strand, 2812634 - 2812675
Alignment:
Q  224 tattttatgaagtacattttatataagtaatagttgttgtga 265  Q
    |||||||||||| ||||||||||||||| |||||| ||||||    
T  2812634 tattttatgaagaacattttatataagtcatagttattgtga 2812675  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 188 - 258
Target Start/End: Original strand, 18606595 - 18606667
Alignment:
Q  188 ttttttcggtataatccgttattgctgttttaagtgtat--tttatgaagtacattttatataagtaatagtt 258  Q
    |||||| |||||||||||||  |||||  | ||||||||  ||||||||| |||||||||||| |||||||||    
T  18606595 tttttttggtataatccgttcatgctgaatcaagtgtatattttatgaagaacattttatataggtaatagtt 18606667  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 44 - 113
Target Start/End: Complemental strand, 30383884 - 30383815
Alignment:
Q  44 caattatcgatgaatttgagtctttgaaaggtcgtcgagttcgactttcatatataactactattaattt 113  Q
    ||||||| |||||||||||||||||||| || || ||||||| | ||||||| ||| |||||||||||||    
T  30383884 caattatggatgaatttgagtctttgaagggccgacgagttcaattttcataaatagctactattaattt 30383815  T

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Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 44 - 148
Target Start/End: Complemental strand, 582950 - 582846
Alignment:
Q  44 caattatcgatgaatttgagtctttgaaaggtcgtcgagttcgactttcatatataactactattaatttttatttccttcgttgttgctttttaggtac 143  Q
    ||||||| |||||||||||||||||||| ||  | ||||||| | |||||||  || ||| ||||| |||||||||| || ||||| ||||||| | |||    
T  582950 caattatggatgaatttgagtctttgaagggcagccgagttcaattttcataagtagctattattagtttttatttcttttgttgtagcttttttgatac 582851  T
Q  144 aatcc 148  Q
    |||||    
T  582850 aatcc 582846  T

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Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 44 - 129
Target Start/End: Original strand, 7640131 - 7640218
Alignment:
Q  44 caattatcgatgaatttgagtctttgaaaggtcgtcgagttcgactttcatatataactac--tattaatttttatttccttcgttgt 129  Q
    ||||||| ||||||||||||| |||||||||||||||||||| | ||||| | ||| ||||  ||||| |||||||||| || |||||    
T  7640131 caattatggatgaatttgagtttttgaaaggtcgtcgagttcaattttcacaaatagctactatattagtttttatttcttttgttgt 7640218  T

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Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 224 - 266
Target Start/End: Complemental strand, 30383702 - 30383660
Alignment:
Q  224 tattttatgaagtacattttatataagtaatagttgttgtgaa 266  Q
    |||||||||||| |||||||||||||||||||||| |||||||    
T  30383702 tattttatgaagaacattttatataagtaatagttattgtgaa 30383660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 44 - 148
Target Start/End: Original strand, 3886567 - 3886671
Alignment:
Q  44 caattatcgatgaatttgagtctttgaaaggtcgtcgagttcgactttcatatataactactattaatttttatttccttcgttgttgctttttaggtac 143  Q
    ||||||| |||||||||||||||||||  || || ||||||| | ||||| |  ||  || |||||||||||||||| || ||||| ||||||| | |||    
T  3886567 caattatggatgaatttgagtctttgacgggccgccgagttcaattttcacaagtagttattattaatttttatttcttttgttgtagcttttttgatac 3886666  T
Q  144 aatcc 148  Q
    |||||    
T  3886667 aatcc 3886671  T

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Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 167 - 266
Target Start/End: Complemental strand, 5122186 - 5122086
Alignment:
Q  167 ttttggtataatccgttgttgtt-ttttcggtataatccgttattgctgttttaagtgtattttatgaagtacattttatataagtaatagttgttgtga 265  Q
    |||||||| |||  ||||||||| |||| ||||||||   || ||| || ||||||||||||| || ||||||||||| ||||| |||||||| ||||||    
T  5122186 ttttggtaaaatatgttgttgttgtttttggtataatttattcttgttgctttaagtgtatttcataaagtacattttgtataaataatagttattgtga 5122087  T
Q  266 a 266  Q
    |    
T  5122086 a 5122086  T

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Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 188 - 258
Target Start/End: Original strand, 3886716 - 3886788
Alignment:
Q  188 ttttttcggtataatccgttattgctgttttaagtgtat--tttatgaagtacattttatataagtaatagtt 258  Q
    |||||| |||||||||||||  |||||  | ||||||||  ||||||||| |||||||||||| |||||||||    
T  3886716 tttttttggtataatccgttcatgctgaatcaagtgtatattttatgaagaacattttatataggtaatagtt 3886788  T

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Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 224 - 265
Target Start/End: Original strand, 7640316 - 7640357
Alignment:
Q  224 tattttatgaagtacattttatataagtaatagttgttgtga 265  Q
    |||||||||||| ||||||||||||||||||| || ||||||    
T  7640316 tattttatgaagaacattttatataagtaatatttattgtga 7640357  T

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Target: scaffold0049 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0049
Description:

Target: scaffold0049; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 189 - 266
Target Start/End: Original strand, 15633 - 15712
Alignment:
Q  189 tttttcggtataatccgttattgctgttttaagtgtat--tttatgaagtacattttatataagtaatagttgttgtgaa 266  Q
    ||||| ||||||||||||| ||| ||  | ||||||||  ||||||||| |||||||||||||||||||||| |||||||    
T  15633 ttttttggtataatccgttcttgttgaatcaagtgtatattttatgaagaacattttatataagtaatagttattgtgaa 15712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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