View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11847_low_19 (Length: 243)
Name: NF11847_low_19
Description: NF11847
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11847_low_19 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 180; Significance: 3e-97; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 17 - 243
Target Start/End: Original strand, 31173389 - 31173615
Alignment:
| Q |
17 |
ataatgattatcaattagtaaccgccctcgcataaagcaaaaattcaaagttgatctcatagggaaaggtgactaaaggtgttgattcactcaattgcaa |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
31173389 |
ataatgattatcaattagtaaccgccctcgcataaagcaaaaattcaaagttgatctcatagggaaaggtgactaaaggtgctgattcactcaattgcaa |
31173488 |
T |
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| Q |
117 |
agcctatagttaagtgaaaacatgaactaagaagtaggaattattacactcacgctgcatcaaggtggcnnnnnnnnnnnnntcaatacatatgctccac |
216 |
Q |
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| T |
31173489 |
agcctatagttaagtgaaaacatgaactaagaagtaggaattattacactcacgctgcatcaaggtggcaaaaaaataaaaatcaatacacatgctccac |
31173588 |
T |
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| Q |
217 |
ggtaattaattaccactggagcatttt |
243 |
Q |
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||||||||||||||||||||||||||| |
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| T |
31173589 |
ggtaattaattaccactggagcatttt |
31173615 |
T |
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Target: chr3 (Bit Score: 109; Significance: 6e-55; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 17 - 180
Target Start/End: Complemental strand, 11268037 - 11267869
Alignment:
| Q |
17 |
ataatgattatcaattagtaaccgccctcgcataaagcaaaaattcaaagttgatctcatagggaaaggtgactaaaggtgttgattcactcaattgcaa |
116 |
Q |
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||||| |||||||||||||||||| ||| |||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||| |
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| T |
11268037 |
ataattattatcaattagtaaccgtccttgcataaagcaaatattcaaagttgatctcatagggaaaggtgactaaaggtgctgattcactcaatggcaa |
11267938 |
T |
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| Q |
117 |
agcct-----atagttaagtgaaaacatgaactaagaagtaggaattattacactcacgctgcatcaag |
180 |
Q |
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| T |
11267937 |
agcctatccaatcgttaagtgaaaacatgaactaggaagtaggaattgttacactcacgctggatcaag |
11267869 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 48 - 145
Target Start/End: Complemental strand, 35094605 - 35094503
Alignment:
| Q |
48 |
ataaagcaaaaattcaaagttgatctcatagggaaaggtgactaaaggtgttgattcactcaattgcaaagcct-----atagttaagtgaaaacatgaa |
142 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||| | ||||||| ||| ||||||||||||||||| |
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| T |
35094605 |
ataaagcaaaaattcaaagttgatttcatagggaaaggtgactaaaggtgctgattcactcaacggtaaagcctatccaataattaagtgaaaacatgaa |
35094506 |
T |
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| Q |
143 |
cta |
145 |
Q |
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||| |
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| T |
35094505 |
cta |
35094503 |
T |
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