View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11847_low_20 (Length: 242)
Name: NF11847_low_20
Description: NF11847
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11847_low_20 |
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Alignment Details
Target: chr7 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 41653914 - 41653687
Alignment:
| Q |
1 |
tcagccttcttttgtgccctggctacatacagaatctttgaacctgttgatataaatcaaaaccagata---tacaggatcaacatcaataaatttcaac |
97 |
Q |
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| T |
41653914 |
tcagccttcttctgtgccctggctacatacagaatctttgaacctgttgatataaatcaaaaccagataatatacaggatcaacatcaataaatttcaac |
41653815 |
T |
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| Q |
98 |
tttgccagccaaaaacctacacaataatagaataaataaactacctagttgcaatccattcattgtttccattgcccttttagcatcttctgggttatcg |
197 |
Q |
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| T |
41653814 |
tttgccagccaaaaacctacacaataatagaataaataa-ctacctagttgcaatccattcattgtttccattgcccttttagcatcttctgggttatcg |
41653716 |
T |
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| Q |
198 |
aagttcacgaagccaaaaccctttgacat |
226 |
Q |
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| T |
41653715 |
aagttcacgaagccaaaaccctttgacat |
41653687 |
T |
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