View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11847_low_3 (Length: 638)

Name: NF11847_low_3
Description: NF11847
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11847_low_3
NF11847_low_3
[»] chr1 (1 HSPs)
chr1 (19-623)||(5053267-5053871)
[»] chr4 (1 HSPs)
chr4 (224-348)||(30767785-30767911)


Alignment Details
Target: chr1 (Bit Score: 451; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 451; E-Value: 0
Query Start/End: Original strand, 19 - 623
Target Start/End: Original strand, 5053267 - 5053871
Alignment:
Q  19 atcattttaaattcaaaaccaacaagaaacgnnnnnnntcaaaataattgacaggcaaatttcacaagaatgtgttcatttaatcttcatccaaccatgt 118  Q
    ||||||||||||||||||||||||||||||        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5053267 atcattttaaattcaaaaccaacaagaaac-aaaaaaatcaaaataattgacaggcaaatttcacaagaatgtgttcatttaatcttcatccaaccatgt 5053365  T
Q  119 tataagatgcgtgtaagaaatttaacatggaatgactttgttgcttgatttgatgannnnnnnnnn-ctttcattcgtttcataatcatttggagagtat 217  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||| |||           |||||||| ||||||||||||||||||||||||    
T  5053366 tataagatgcgtgtaagaaatttaacaaggaatgactttgttgcttgatttgctgattattttttttctttcatttgtttcataatcatttggagagtat 5053465  T
Q  218 gaacatgaaccttgacctagaaatgaccgagtttaccatgaatccaactttctttatataataagtagttgtttcactgctccatttcacaattctctta 317  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||    
T  5053466 gaacatgaaccttgacctagaaatgaccgagtttaccatgaatccaactttctttatataatcagtggttgtttcactgctccatttcacaattctctta 5053565  T
Q  318 tgctggctctcaaaaggggtttggttttggtcttcatatggttggttgattcacagtcaagaaatcaaatcattgtgttcttggaagggagttccgatta 417  Q
    |  ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||    
T  5053566 tattggctctcaaaaggggtttggttttggtcttcatatggttggttgattcacagccaagaaatcaaatcattgtattcttggaagggagttccgatta 5053665  T
Q  418 acaagacaataagttacaaag--cacagtcaatggcatgaaaaatgagcttataatttaattcaaaactacaactgcttcgtgcgtgatcatcattaagg 515  Q
    || ||||||||||||||||||  |||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||| ||||||||||||||||    
T  5053666 acgagacaataagttacaaagaacacagtcaatggcatgaaaaatgagcttataattcaattcaaaactacatctgcttcgtgtgtgatcatcattaagg 5053765  T
Q  516 ggtcaagagacaaaatttgtataaataattagcagacattcaccaagtgttttcaaatcaaatttggataaataaattaattaagtcaaaccctttatgc 615  Q
    |||||  ||||||||  ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||    
T  5053766 ggtca--agacaaaaactgtataaataattagcagacattcaccaagtgtttccaaatcaaatttggataaataaattaattaagtcaaaccctttaagc 5053863  T
Q  616 ataaaact 623  Q
    ||||||||    
T  5053864 ataaaact 5053871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 52; Significance: 2e-20; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 224 - 348
Target Start/End: Original strand, 30767785 - 30767911
Alignment:
Q  224 gaaccttgacctagaaatgaccg--agtttaccatgaatccaactttctttatataataagtagttgtttcactgctccatttcacaattctcttatgct 321  Q
    |||||||| |||||||||||| |  ||||||||||||||||||||||||||||||||| | | ||||||||| || |||| ||| ||||||| | ||  |    
T  30767785 gaaccttggcctagaaatgactgtgagtttaccatgaatccaactttctttatataatcattggttgtttcattgttccaattctcaattctatgatatt 30767884  T
Q  322 ggctctcaaaaggggtttggttttggt 348  Q
    || ||||||||  ||||||||||||||    
T  30767885 ggttctcaaaaaaggtttggttttggt 30767911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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