View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11847_low_6 (Length: 532)
Name: NF11847_low_6
Description: NF11847
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11847_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 333; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 1 - 395
Target Start/End: Complemental strand, 34034238 - 34033852
Alignment:
| Q |
1 |
tgaagttggagaacggttgtttttaaatgacaaatgttagtattttaatatttttcttgtgattgattgattactataggccaaccagtgccccgttgaa |
100 |
Q |
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| T |
34034238 |
tgaagttggagaaccgttgtttttaaatgacaaatgttagtatgttaatatttttcttgtgatt--------actataggccaaccagtgccccgttgaa |
34034147 |
T |
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| Q |
101 |
atggaactcatcaactatggtgtccgaggaatatccaagtaaacaaggggtgtcannnnnnncatgcaatgatcattcatttggagttcaacacgaggat |
200 |
Q |
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| T |
34034146 |
atggaactcatcaactatggtgtccgaggaatatccaagtaaacaaggggtgtcatttttttcatgcaatgatcattcatttggagttcaacacgaggat |
34034047 |
T |
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| Q |
201 |
aatgaatacaagacaaacttcaaaagctctcctcaaggattctcaaaattagtctcatccccggcaactactagtctcggatctgattcatatcaaggcg |
300 |
Q |
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| T |
34034046 |
aatgaatacaagacaaacttcaaaagctctcctcaaggattctcaaaattagtctcatccccggcaactactagtcttggatctgattcatatcaaggcg |
34033947 |
T |
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| Q |
301 |
ccaaagtatttgccgatgactgtgagctaaattccccatctgagtctaaatgttcagtttatgatcatgtgctttcagaacaaattacagaacag |
395 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34033946 |
ccaaagtatttgccgatgactgtgagctaaattccccatctgagtctaaatgttcagtttatgatcatgtgctttcagaacaaattacagaacag |
34033852 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 448 - 532
Target Start/End: Complemental strand, 34033799 - 34033715
Alignment:
| Q |
448 |
gctcttatgtcatagaaattaactccagcctcagaagggaagattgtgaagcgtcagacatcgatgaagcaattgcatgggccaa |
532 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34033799 |
gctcttatgtcatagaaattaactccagcctcagaagggaagattgtgaagcgtcagacatcgatgaagcaattgcatgggccaa |
34033715 |
T |
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