View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11847_low_7 (Length: 524)
Name: NF11847_low_7
Description: NF11847
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11847_low_7 |
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Alignment Details
Target: chr8 (Bit Score: 441; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 441; E-Value: 0
Query Start/End: Original strand, 25 - 510
Target Start/End: Original strand, 34033239 - 34033737
Alignment:
| Q |
25 |
gaatccgattaagatttgtatcagttattagcaatatatagttttaccttaggaggttgaacttttccaattccataatcatggtattcacttgcatcag |
124 |
Q |
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| T |
34033239 |
gaatccgattaagatttgtatcagttattagcaatatatagttttaccttaggaggttgaacttttccaattccataatcatggtattcacttgcatcag |
34033338 |
T |
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| Q |
125 |
gacttcctgcaaca--------------aacatgagataaaaacatgaggtagcttgcttttgtctctttctgtcaacaaaatttgttaacctttgagaa |
210 |
Q |
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| T |
34033339 |
gacttcctgcaacatatgatgagtaacaaacatgagataaaaacatgaggtagcttgcttttgtctctttc-gtcaacaaaatttgttaacctttgagaa |
34033437 |
T |
|
| Q |
211 |
tttttatctgtgtagcatcaacacttcagatcgaaggtgtgtcccgtatttgacactgacacaagcagttacattacattaattgattttcattttctta |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34033438 |
tttttatctgtgtagcatcaacacttcagatcgaaggtgtgtcccgtatttgacactgacacaagcagttacattacattaattgattttcattttctta |
34033537 |
T |
|
| Q |
311 |
aactattacgagtatctatgtgtctgtattagtgttgtgttcagtgtttgtgtgagtgcttcttaattttttactatcagttaagataatcaatcacctt |
410 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34033538 |
aactattacgagtatctatgtgtctgtattagtgttgtgttcagtgtttgtgtgagtgcttcttaattttttactatcagttaagataatcaatcacctt |
34033637 |
T |
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| Q |
411 |
gcattttaaaagtctgttcattgccatcatatctcattcttgacttttcatcagggcttcttgattgaaacttctctttggcccatgcaattgcttcatc |
510 |
Q |
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| T |
34033638 |
gcattttaacagtctgttcattgccatcatatctcattcttgacttttcatcagggcttcttgattgaaacttctctttggcccatgcaattgcttcatc |
34033737 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 473 - 510
Target Start/End: Complemental strand, 22360965 - 22360928
Alignment:
| Q |
473 |
gattgaaacttctctttggcccatgcaattgcttcatc |
510 |
Q |
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| T |
22360965 |
gattgaaacttctctttggcccatgcaatcgcttcatc |
22360928 |
T |
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