View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11847_low_9 (Length: 485)
Name: NF11847_low_9
Description: NF11847
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11847_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 212; Significance: 1e-116; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 157 - 384
Target Start/End: Complemental strand, 43317919 - 43317692
Alignment:
| Q |
157 |
tatttcagaacatcaaatatgacattgacaatattgtaaacatcattgacaaagtgataagtggaagtgattagatgtaaactcttatgactgagcaagc |
256 |
Q |
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| T |
43317919 |
tatttcagaacgtcgaatatgacattgacaatattgtaaacatcattgacaaagtgataagtggaagtgattagatataaactcttatgactgagcaagc |
43317820 |
T |
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| Q |
257 |
aactcggacaattttggtaggtatttagaacattttgaaacttattttttagactataagtaattgtgctatgaaagtttatttcagaactcaattacag |
356 |
Q |
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| T |
43317819 |
aactcggacaattttggtaggtatttagaacattttgaaacttattttatagactataagtaattgtgctatgaaagtttatttcagaactcaattacag |
43317720 |
T |
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| Q |
357 |
tttgtaaactacagcattgtttgaaaag |
384 |
Q |
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| T |
43317719 |
tttgtaaactacagcattgtttgaaaag |
43317692 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 1 - 127
Target Start/End: Complemental strand, 43318120 - 43317994
Alignment:
| Q |
1 |
aagaatgggcgagctgaacattcggtattactatatgcacccacgcaattcaataccaacaccccaacaaattaagtattgctaccaacaccatgaaaaa |
100 |
Q |
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| T |
43318120 |
aagaatgcgcgagctgaacattcggtattactatatgcacccacgcaattcaataccaacaccccaacaaattaagtattgctaccaacaccatgaaaaa |
43318021 |
T |
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| Q |
101 |
tactactcacacgccttacaagtatta |
127 |
Q |
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| T |
43318020 |
tactactcacacgccttacaagtatta |
43317994 |
T |
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