View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11848_low_1 (Length: 767)
Name: NF11848_low_1
Description: NF11848
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11848_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 156; Significance: 2e-82; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 156; E-Value: 2e-82
Query Start/End: Original strand, 582 - 749
Target Start/End: Original strand, 18841831 - 18841998
Alignment:
| Q |
582 |
actattttatgcaatcgataattcacaacattggttaaaatctcgtatagtacacaacatgttttaagagctcaatgcaacacaatttactatgacataa |
681 |
Q |
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| T |
18841831 |
actattttatgcaatcgaaaattcacaacattggttaaaatctcgtatagtacacaacatgttttaagagctcaatgcaacaaaatttactatgacataa |
18841930 |
T |
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| Q |
682 |
aaacttgtaagatgatagttttagcttgtaggttgtttaggattggactataaagtaaacaagggaag |
749 |
Q |
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| T |
18841931 |
aaacttgtaagatgatagttttagcttgtaggttgtttaggataggactataaagtaaacaagggaag |
18841998 |
T |
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Target: chr8 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 210 - 255
Target Start/End: Original strand, 14248302 - 14248347
Alignment:
| Q |
210 |
ctccaagacaccacctcggattccaccgccattcgtaatacaaaca |
255 |
Q |
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| T |
14248302 |
ctccaagataccatctcggattccaccgccattcataatacaaaca |
14248347 |
T |
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Target: chr5 (Bit Score: 33; Significance: 0.000000004; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 212 - 256
Target Start/End: Complemental strand, 33392098 - 33392054
Alignment:
| Q |
212 |
ccaagacaccacctcggattccaccgccattcgtaatacaaacat |
256 |
Q |
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| T |
33392098 |
ccaagacaccacctcggattccacctccattcgtaaagcaaacat |
33392054 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 483 - 548
Target Start/End: Original strand, 4254323 - 4254388
Alignment:
| Q |
483 |
ccaagtcaccttacaatgtaagaataaatgatttgtcgactcctccacctcattacaaaaaacaca |
548 |
Q |
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| T |
4254323 |
ccaagtcaccctacaatgcaaaaagaggtgacttgtggactcctccacctcattacaaagaacaca |
4254388 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 474 - 548
Target Start/End: Original strand, 50192400 - 50192475
Alignment:
| Q |
474 |
ccaaatcctccaagtcaccttacaatgtaagaataaatgatttgtcgactcc-tccacctcattacaaaaaacaca |
548 |
Q |
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| T |
50192400 |
ccaaatcttccaattcacattacaatgcaaaaagagatgattggtggactccctccacctcattacaaaaaacaca |
50192475 |
T |
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