View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11848_low_2 (Length: 556)
Name: NF11848_low_2
Description: NF11848
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11848_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 181; Significance: 2e-97; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 181; E-Value: 2e-97
Query Start/End: Original strand, 15 - 335
Target Start/End: Complemental strand, 32104447 - 32104128
Alignment:
| Q |
15 |
atgaagtatcaattacttcgaaggaaaatgtttggtgtacatctcatataaatgtatacaccttnnnnnnnnnnnnnnnnnnnnnnnntatgatagatat |
114 |
Q |
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| T |
32104447 |
atgaagtatcgattacttcgaaggaaaatgtttggtatacacctcatataaatgtatacaccttaaaagaaagagaaaagaagaaagatgtgataaatgt |
32104348 |
T |
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| Q |
115 |
aatatattgatgatattaaacgagtgtatgaaattcaaaggtctttatttatcatccttgtactcttcatttatcatcgttgtactcataataatctcta |
214 |
Q |
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||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
32104347 |
aatatgttgatgatgttaaacgagtgtatgaaattcaaaggtctttatttatcatccttgtactcttcatttatcattgttgtactcataataatctcta |
32104248 |
T |
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| Q |
215 |
gttgtgttttattactgtttgtgctacacnnnnnnnnnatatattatctcgtacaatcaaaaaccaagctagctggcgccctcaaaatgactaacacaac |
314 |
Q |
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| T |
32104247 |
gttgtgttttattactgtttgtgctacac-ttttttttatatattatctcgtacaatcaaaaaccaagctagctggcgccctcaaaatgactaacacaac |
32104149 |
T |
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| Q |
315 |
taactaacaaaccaaactatg |
335 |
Q |
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| T |
32104148 |
taactaacaaaccaaactatg |
32104128 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 367 - 538
Target Start/End: Complemental strand, 32104098 - 32103927
Alignment:
| Q |
367 |
gtagcacccaaaaactggctggtagaccaaccagtcaaaaaatactccctcctttgctacatcactcttcacttcatccttcaaattaaaccatttctct |
466 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32104098 |
gtagcacccaaaaactggctggtagaccaaccagtcaaaaaatactccctcctttgctacatcactcttcacttcatccttcaaattaaaccatttctct |
32103999 |
T |
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| Q |
467 |
tttcttaaccaacaaaccttattctatatatgatcttatacaaacacatatagtagtatttattgaatctct |
538 |
Q |
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| T |
32103998 |
tttcttaaccaataaaccttcttctatatatgatcttatacaaacacatatagtagtatttattgaatctct |
32103927 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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