View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11848_low_3 (Length: 405)
Name: NF11848_low_3
Description: NF11848
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11848_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 315; Significance: 1e-177; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 21 - 383
Target Start/End: Complemental strand, 15867100 - 15866738
Alignment:
| Q |
21 |
cagaccctgatcaaattaaggaagtctttaacaagatcgaagacttccccaaaccaatattaaaatccatcgccaagtatttgagcgttggtatagtaca |
120 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
15867100 |
cagaccctgatcaaattaaggaagtctttaacaagatcgaggacttccccaaaccaatattaaaatccatcgccaagtatttgagcgttggtataataca |
15867001 |
T |
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| Q |
121 |
ttatgagggtaagaaatgggctaaacataggaagatcgccaatccggcattccacctagaaaaattgaaagtaaggttattgctttaataattcttgcaa |
220 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15867000 |
ttatgagggtaagaaatgggctaaacataggaagatcgccaatccggcattccacctagaaaaattgaaagtaaggttattgctttaataattcttgcaa |
15866901 |
T |
|
| Q |
221 |
tttggtaaattaaatttctaatttttattcttataatatgatttatttcaaactataggttatgctgcctgcattttctcacagttgcaatgaaatgata |
320 |
Q |
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| T |
15866900 |
ttttgcaaattaaatttctaatttttattcttataatatgatttacttcaaactatagggtatgctacctgcattttcttacagttgcaatgaaatgatt |
15866801 |
T |
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| Q |
321 |
agcaaatggaaggaattattgtcatcagatggaacatgtgagcttgatgtttggcctttcctt |
383 |
Q |
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| T |
15866800 |
agtaaatggaaggaactattgtcatcagatggaacatgtgaggttgatgtttggcctttcctt |
15866738 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 19 - 383
Target Start/End: Complemental strand, 15860716 - 15860351
Alignment:
| Q |
19 |
cacagaccctgatcaaattaaggaagtctttaacaagatcgaagacttccccaaaccaatattaaaatccatcgccaagtatttgagcgttggtatagta |
118 |
Q |
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| T |
15860716 |
cacagaccctgatcaaattaaggatgtctttaacaagattgatgacttccccaaaccaaaactaagatccatcgccaagtatttgaacgttggtatacta |
15860617 |
T |
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| Q |
119 |
cattatgagggtaagaaatgggctaaacataggaagatcgccaatccggcattccacctagaaaaattgaaagtaaggttattgctttaat-aattcttg |
217 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
15860616 |
gatcatgagggtaagaaatgggctaaacataggaagatcgccaatccagcattccacctagaaaaattgaaagtaaggttattgctttaattaattcttg |
15860517 |
T |
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| Q |
218 |
caatttggtaaattaaatttctaatttttattcttataatatgatttatttcaaactataggttatgctgcctgcattttctcacagttgcaatgaaatg |
317 |
Q |
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| T |
15860516 |
caattttgtaaattaaatttctaatttttattcttataatatgatttacttcaaactataggttatgctgcctgcattttctcacagttgcaatgaaatg |
15860417 |
T |
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| Q |
318 |
ataagcaaatggaaggaattattgtcatcagatggaacatgtgagcttgatgtttggcctttcctt |
383 |
Q |
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| T |
15860416 |
ataagcaaatggaagggattattgtcatcagatggaacatgtgagattgatgtttggccttccctt |
15860351 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 19 - 383
Target Start/End: Complemental strand, 15853354 - 15852990
Alignment:
| Q |
19 |
cacagaccctgatcaaattaaggaagtctttaacaagatcgaagacttccccaaaccaatattaaaatccatcgccaagtatttgagcgttggtatagta |
118 |
Q |
| |
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|||||||||||||||||||||||| ||||||||||||| || ||||||||||||| || |||| | |||| ||| ||||||||| |||||||||||| |
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| T |
15853354 |
cacagaccctgatcaaattaaggatgtctttaacaagactgaggacttccccaaacaaaagttaagacccattgccttgtatttgagtgttggtatagta |
15853255 |
T |
|
| Q |
119 |
cattatgagggtaagaaatgggctaaacataggaagatcgccaatccggcattccacctagaaaaattgaaagtaaggttattgctttaataattcttgc |
218 |
Q |
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|| |||||||| |||||||||||| |||| | ||||| | ||||||||||||||| ||||||||||||||||||||||||| ||| ||||| || | |
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| T |
15853254 |
caccatgagggtgagaaatgggctacacatcgaaagatagtcaatccggcattccatatagaaaaattgaaagtaaggttattacttagctaattatttc |
15853155 |
T |
|
| Q |
219 |
aatttggtaaattaaatttctaatttttattcttataatatgatttatttcaaactataggttatgctgcctgcattttctcacagttgcaatgaaatga |
318 |
Q |
| |
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||||| | ||||| ||||||||| |||| ||||||| |||||||||| |||| |||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
15853154 |
aattttgcaaattgaatttctaacttttcttcttattatatgatttacttcatactatagggtatgctgcctgcattttctcacagttgcaatgaaatga |
15853055 |
T |
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| Q |
319 |
taagcaaatggaaggaattattgtcatcagatggaacatgtgagcttgatgtttggcctttcctt |
383 |
Q |
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| T |
15853054 |
taagcaaatggaatggtttattgtcatcagatggaacatgtgagattgatgtttggcctttcctt |
15852990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 19 - 383
Target Start/End: Complemental strand, 15846526 - 15846162
Alignment:
| Q |
19 |
cacagaccctgatcaaattaaggaagtctttaacaagatcgaagacttccccaaaccaatattaaaatccatcgccaagtatttgagcgttggtatagta |
118 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||| ||| || |||||||||||| ||| || | ||||| |||||||||| | |||||||||| | |
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| T |
15846526 |
cacagaccctgatcaaattaaggaaatctttaacaggatggaggacttccccaaatcaaagttcatctccatttccaagtatttcggtgttggtatagca |
15846427 |
T |
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| Q |
119 |
cattatgagggtaagaaatgggctaaacataggaagatcgccaatccggcattccacctagaaaaattgaaagtaaggttattgctttaa-taattcttg |
217 |
Q |
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|| | |||||| ||||||||||||||||| | ||||| | |||||||||||||||| |||||||||||||||||||||||||||| || ||||| || |
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| T |
15846426 |
caccaagagggtgagaaatgggctaaacatcgaaagatagtcaatccggcattccacatagaaaaattgaaagtaaggttattgctctagctaattattt |
15846327 |
T |
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| Q |
218 |
caatttggtaaattaaatttctaatttttattcttataatatgatttatttcaaactataggttatgctgcctgcattttctcacagttgcaatgaaatg |
317 |
Q |
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|||||| |||| || ||||||||| |||| |||||||||||||||||| || | ||| |||| ||||||||||||||||||||||||||||||||||||| |
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| T |
15846326 |
caattttgtaa-ttgaatttctaaattttcttcttataatatgatttactttatactgtagggtatgctgcctgcattttctcacagttgcaatgaaatg |
15846228 |
T |
|
| Q |
318 |
ataagcaaatggaaggaattattgtcatcagatggaacatgtgagcttgatgtttggcctttcctt |
383 |
Q |
| |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15846227 |
ataagcaaatggaagggattattgtcatcagatggaacatgtgagcttgatgtttggcctttcctt |
15846162 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 303 - 361
Target Start/End: Original strand, 30394070 - 30394128
Alignment:
| Q |
303 |
agttgcaatgaaatgataagcaaatggaaggaattattgtcatcagatggaacatgtga |
361 |
Q |
| |
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| T |
30394070 |
agttgcaatgatatgattagcaaatgggaggaaatgttgtcttcagatggatcatgtga |
30394128 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 339 - 383
Target Start/End: Original strand, 30475271 - 30475315
Alignment:
| Q |
339 |
ttgtcatcagatggaacatgtgagcttgatgtttggcctttcctt |
383 |
Q |
| |
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||||||||||||||| ||||||| | |||||||||||||||||| |
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| T |
30475271 |
ttgtcatcagatggatcatgtgaattggatgtttggcctttcctt |
30475315 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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