View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11848_low_4 (Length: 367)

Name: NF11848_low_4
Description: NF11848
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11848_low_4
NF11848_low_4
[»] chr1 (1 HSPs)
chr1 (19-362)||(33304004-33304360)


Alignment Details
Target: chr1 (Bit Score: 301; Significance: 1e-169; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 19 - 362
Target Start/End: Original strand, 33304004 - 33304360
Alignment:
Q  19 ctttctgattttgtagaatagacaacgttaatatctcattgaagcttgacatatattcatcaatgtatatgtattttttgacagctttgtccatctaaat 118  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33304004 ctttctgattttgtagaatagacaacgttaacatctcattgaagcttgacatatattcatcaatgtatatgtattttttgacagctttgtccatctaaat 33304103  T
Q  119 ataatggtaaagtccgtttgacggcttggatataataagctaccatattttgtcttaatacatgtttgacatgtcagtaatcattgataagataatc--- 215  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       
T  33304104 ataatggtaaagtccgtttgacggcttggatataataagctaccatattttgtcttaatacatgtttgacatgtcagtaatcattgataagataatcatc 33304203  T
Q  216 ----------atcatgtctcattagtaaaatatggacttgaatcctgttaaagtgtaattagatatttcacctttctctgcatttcactctcaaatctca 305  Q
              ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33304204 atgtcactttatcatgtctcaatagtaaaatatggacttgaatcctgttaaagtgtaattagatatttcacctttctctgcatttcactctcaaatctca 33304303  T
Q  306 taccgtttctttgtttaatcgcaattctcagcaattgcaaattttgtctctgcttct 362  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  33304304 taccgtttctttgtttaatcgcaattctcagcaattgcaaattttgtctctgattct 33304360  T

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