View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11848_low_6 (Length: 294)

Name: NF11848_low_6
Description: NF11848
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11848_low_6
NF11848_low_6
[»] scaffold0758 (1 HSPs)
scaffold0758 (60-163)||(516-619)
[»] chr5 (4 HSPs)
chr5 (60-162)||(30909051-30909153)
chr5 (60-163)||(37999818-37999921)
chr5 (31-161)||(42639967-42640096)
chr5 (171-214)||(37999740-37999783)
[»] chr7 (5 HSPs)
chr7 (30-163)||(8460916-8461048)
chr7 (78-163)||(13164960-13165045)
chr7 (60-164)||(22076541-22076645)
chr7 (97-151)||(29586587-29586641)
chr7 (97-151)||(9992204-9992257)
[»] chr3 (5 HSPs)
chr3 (61-165)||(29447834-29447938)
chr3 (30-161)||(9102676-9102805)
chr3 (171-214)||(29447757-29447800)
chr3 (171-214)||(9102597-9102640)
chr3 (213-278)||(20796350-20796415)
[»] chr4 (4 HSPs)
chr4 (217-278)||(26763424-26763485)
chr4 (213-261)||(26764297-26764345)
chr4 (210-261)||(6056999-6057050)
chr4 (213-261)||(32138837-32138885)
[»] chr2 (4 HSPs)
chr2 (59-164)||(35673143-35673247)
chr2 (171-214)||(35673282-35673325)
chr2 (213-273)||(9157015-9157075)
chr2 (97-146)||(14489828-14489877)
[»] chr6 (4 HSPs)
chr6 (63-159)||(193601-193695)
chr6 (30-107)||(32451537-32451616)
chr6 (119-169)||(32451661-32451711)
chr6 (171-214)||(32452058-32452101)
[»] chr8 (2 HSPs)
chr8 (97-144)||(40842689-40842736)
chr8 (97-151)||(41959519-41959573)


Alignment Details
Target: scaffold0758 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: scaffold0758
Description:

Target: scaffold0758; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 60 - 163
Target Start/End: Original strand, 516 - 619
Alignment:
Q  60 cacaccaaattgatttgtaaaaatgaaatggtt-gaataatagatggaatcaaattctaaataattaaccaaagtagaaaatgtcaatgttttgtcttaa 158  Q
    |||||||||||||||| |||||||||||||||| ||||||||||| || |||||||||||||||||||||||||||||||||||||| ||||| ||||||    
T  516 cacaccaaattgatttataaaaatgaaatggtttgaataatagatagactcaaattctaaataattaaccaaagtagaaaatgtcaaggtttt-tcttaa 614  T
Q  159 atttt 163  Q
    |||||    
T  615 atttt 619  T

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Target: chr5 (Bit Score: 72; Significance: 9e-33; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 60 - 162
Target Start/End: Complemental strand, 30909153 - 30909051
Alignment:
Q  60 cacaccaaattgatttgtaaaaatgaaatggtt-gaataatagatggaatcaaattctaaataattaaccaaagtagaaaatgtcaatgttttgtcttaa 158  Q
    |||||||||||||||| |||||||||||||||| |||||||||||||| |||||||||||||||||||| ||||||||||||||||| ||||| ||||||    
T  30909153 cacaccaaattgatttataaaaatgaaatggtttgaataatagatggactcaaattctaaataattaactaaagtagaaaatgtcaaggtttt-tcttaa 30909055  T
Q  159 attt 162  Q
    ||||    
T  30909054 attt 30909051  T

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Target: chr5; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 60 - 163
Target Start/End: Complemental strand, 37999921 - 37999818
Alignment:
Q  60 cacaccaaattgatttgtaaaaatgaaatggtt-gaataatagatggaatcaaattctaaataattaaccaaagtagaaaatgtcaatgttttgtcttaa 158  Q
    |||||||||||||||| |||||||||||||||| |||||||||||| | ||||||||||||||||||||||  | |||||||||||| ||||| ||||||    
T  37999921 cacaccaaattgatttataaaaatgaaatggtttgaataatagatgaactcaaattctaaataattaaccacgggagaaaatgtcaa-gttttttcttaa 37999823  T
Q  159 atttt 163  Q
    |||||    
T  37999822 atttt 37999818  T

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Target: chr5; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 31 - 161
Target Start/End: Complemental strand, 42640096 - 42639967
Alignment:
Q  31 atttaagaaataattatcttannnnnnnccacaccaaattgatttgtaaaaatgaaatggtt-gaataatagatggaatcaaattctaaataattaacca 129  Q
    |||||||||||||||||||||       ||||||||||||||||| |||| || |||||||| ||||||||||||| | | |||| ||||||||||||||    
T  42640096 atttaagaaataattatcttattttct-ccacaccaaattgatttataaagattaaatggtttgaataatagatgggagccaattataaataattaacca 42639998  T
Q  130 aagtagaaaatgtcaatgttttgtcttaaatt 161  Q
    |||||||||||||||| ||||| |||||||||    
T  42639997 aagtagaaaatgtcaaggtttt-tcttaaatt 42639967  T

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Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 171 - 214
Target Start/End: Complemental strand, 37999783 - 37999740
Alignment:
Q  171 acaaattgagaaaattattcaaaagaataggtataaaatattgg 214  Q
    ||||||||||||||||||||||||||| | ||||||||||||||    
T  37999783 acaaattgagaaaattattcaaaagaacatgtataaaatattgg 37999740  T

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Target: chr7 (Bit Score: 62; Significance: 8e-27; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 30 - 163
Target Start/End: Complemental strand, 8461048 - 8460916
Alignment:
Q  30 catttaagaaataattatcttannnnnnnccacaccaaattgatttgtaaaaatgaaatggtt-gaataatagatggaatcaaattctaaataattaacc 128  Q
    |||||||||||||||||||||        ||||||||||||||||| |||||||||| ||||| |||||||||||||||||||||||||  |||| ||||    
T  8461048 catttaagaaataattatcttttctttttccacaccaaattgatttataaaaatgaagtggtttgaataatagatggaatcaaattctatctaatcaacc 8460949  T
Q  129 aaagtagaaaatgtcaatgttttgtcttaaatttt 163  Q
    ||||||| ||||||||| ||||| |||||||||||    
T  8460948 aaagtag-aaatgtcaaggtttt-tcttaaatttt 8460916  T

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Target: chr7; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 78 - 163
Target Start/End: Original strand, 13164960 - 13165045
Alignment:
Q  78 aaaaatgaaatggtt-gaataatagatggaatcaaattctaaataattaaccaaagtagaaaatgtcaatgttttgtcttaaatttt 163  Q
    ||||||||||||||| |||||||||||||||||||||||||| ||| ||  |||||||||||||||||| ||||| |||||||||||    
T  13164960 aaaaatgaaatggtttgaataatagatggaatcaaattctaagtaaataggcaaagtagaaaatgtcaaggtttt-tcttaaatttt 13165045  T

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Target: chr7; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 60 - 164
Target Start/End: Complemental strand, 22076645 - 22076541
Alignment:
Q  60 cacaccaaattgatttgtaaaaat-gaaatggtt-gaataatagatggaatcaaattctaaataattaaccaaagtagaaaatgtcaatgttttgtctta 157  Q
    ||||||||| |||||||||||||  ||||||||| |||| || || |||||||||| |||||||||||||| |||||||||||||||| |||||||||||    
T  22076645 cacaccaaaatgatttgtaaaaagagaaatggtttgaatcatggagggaatcaaatactaaataattaacc-aagtagaaaatgtcaa-gttttgtctta 22076548  T
Q  158 aattttt 164  Q
    |||||||    
T  22076547 aattttt 22076541  T

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Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 97 - 151
Target Start/End: Complemental strand, 29586641 - 29586587
Alignment:
Q  97 aatagatggaatcaaattctaaataattaaccaaagtagaaaatgtcaatgtttt 151  Q
    |||||||||||| |||||| || |||||||||||||||| |||||||||| ||||    
T  29586641 aatagatggaataaaattcaaattaattaaccaaagtaggaaatgtcaatatttt 29586587  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 97 - 151
Target Start/End: Complemental strand, 9992257 - 9992204
Alignment:
Q  97 aatagatggaatcaaattctaaataattaaccaaagtagaaaatgtcaatgtttt 151  Q
    |||||||||||| ||||||| ||||||||| |||||||| |||||||||| ||||    
T  9992257 aatagatggaataaaattct-aataattaatcaaagtaggaaatgtcaatatttt 9992204  T

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Target: chr3 (Bit Score: 62; Significance: 8e-27; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 61 - 165
Target Start/End: Complemental strand, 29447938 - 29447834
Alignment:
Q  61 acaccaaattgatttgtaaaaatgaaatggtt-gaataatagatggaatcaaattctaaataattaaccaaagtagaaaatgtcaatgttttgtcttaaa 159  Q
    ||||||||||||||| |||||||||| |  || |||| ||||||||||||||||||||||||||||||||||||||||||||| || ||||| |||||||    
T  29447938 acaccaaattgatttataaaaatgaagtattttgaatgatagatggaatcaaattctaaataattaaccaaagtagaaaatgttaaagtttt-tcttaaa 29447840  T
Q  160 tttttt 165  Q
    ||||||    
T  29447839 tttttt 29447834  T

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Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 30 - 161
Target Start/End: Complemental strand, 9102805 - 9102676
Alignment:
Q  30 catttaagaaataattatcttannnnnnnccacaccaaattgatttgtaaaaatgaaatggtt-gaataatagatggaatcaaattctaaataattaacc 128  Q
    ||||||||||||||||||||||       |||| |||||||||||| |||| || |||||||| |||||| | |||||| | |||| ||||||||||||     
T  9102805 catttaagaaataattatcttattttct-ccaccccaaattgatttataaagattaaatggtttgaataaaaaatggaagccaattataaataattaac- 9102708  T
Q  129 aaagtagaaaatgtcaatgttttgtcttaaatt 161  Q
    ||||||||||||||||| ||||| |||||||||    
T  9102707 aaagtagaaaatgtcaaggtttt-tcttaaatt 9102676  T

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Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 171 - 214
Target Start/End: Complemental strand, 29447800 - 29447757
Alignment:
Q  171 acaaattgagaaaattattcaaaagaataggtataaaatattgg 214  Q
    |||||||||||||| |||||||||||||| ||||||||||||||    
T  29447800 acaaattgagaaaactattcaaaagaatatgtataaaatattgg 29447757  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 171 - 214
Target Start/End: Complemental strand, 9102640 - 9102597
Alignment:
Q  171 acaaattgagaaaattattcaaaagaataggtataaaatattgg 214  Q
    ||||||||||||||||||  ||||||| ||||||||||||||||    
T  9102640 acaaattgagaaaattatagaaaagaacaggtataaaatattgg 9102597  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 213 - 278
Target Start/End: Complemental strand, 20796415 - 20796350
Alignment:
Q  213 ggtggattctaaggcgagggttctaccaaatccttcaccggtggaccaccttgaataacaattagg 278  Q
    ||||||||||||||  ||||  ||||||| ||| || |||||||||||| |||||| |||||||||    
T  20796415 ggtggattctaaggtcagggcactaccaagtccctctccggtggaccactttgaattacaattagg 20796350  T

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Target: chr4 (Bit Score: 58; Significance: 2e-24; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 217 - 278
Target Start/End: Original strand, 26763424 - 26763485
Alignment:
Q  217 gattctaaggcgagggttctaccaaatccttcaccggtggaccaccttgaataacaattagg 278  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26763424 gattctaaggtgagggttctaccaaatccttcaccggtggaccaccttgaataacaattagg 26763485  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 213 - 261
Target Start/End: Complemental strand, 26764345 - 26764297
Alignment:
Q  213 ggtggattctaaggcgagggttctaccaaatccttcaccggtggaccac 261  Q
    |||| ||||||||| |||||||||| ||||||| |||||||||||||||    
T  26764345 ggtgaattctaaggtgagggttctatcaaatccctcaccggtggaccac 26764297  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 210 - 261
Target Start/End: Complemental strand, 6057050 - 6056999
Alignment:
Q  210 attggtggattctaaggcgagggttctaccaaatccttcaccggtggaccac 261  Q
    |||||||||||||| || ||||||||||| || ||| |||||||||||||||    
T  6057050 attggtggattctagggtgagggttctactaagtccctcaccggtggaccac 6056999  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 213 - 261
Target Start/End: Complemental strand, 32138885 - 32138837
Alignment:
Q  213 ggtggattctaaggcgagggttctaccaaatccttcaccggtggaccac 261  Q
    |||||||||||||| ||||| |||| ||||||  |||||||||||||||    
T  32138885 ggtggattctaaggtgagggctctatcaaatcactcaccggtggaccac 32138837  T

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Target: chr2 (Bit Score: 55; Significance: 1e-22; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 59 - 164
Target Start/End: Original strand, 35673143 - 35673247
Alignment:
Q  59 ccacaccaaattgatttgtaaaaatgaaatggtt-gaataatagatggaatcaaattctaaataattaaccaaagtagaaaatgtcaatgttttgtctta 157  Q
    ||||||||||||| ||| ||| |||||| | ||| ||||| |||||| |||||||||||||||||||||||||||||||||||||||| ||||| |||||    
T  35673143 ccacaccaaattgctttataataatgaagtagtttgaata-tagatgtaatcaaattctaaataattaaccaaagtagaaaatgtcaaggtttt-tctta 35673240  T
Q  158 aattttt 164  Q
    |||||||    
T  35673241 aattttt 35673247  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 171 - 214
Target Start/End: Original strand, 35673282 - 35673325
Alignment:
Q  171 acaaattgagaaaattattcaaaagaataggtataaaatattgg 214  Q
    |||||||||||||| |||||||||||||| ||||||||||||||    
T  35673282 acaaattgagaaaactattcaaaagaatatgtataaaatattgg 35673325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 213 - 273
Target Start/End: Original strand, 9157015 - 9157075
Alignment:
Q  213 ggtggattctaaggcgagggttctaccaaatccttcaccggtggaccaccttgaataacaa 273  Q
    ||||||||||| |||||||||||||  |||||| ||||||||| ||||| ||||| |||||    
T  9157015 ggtggattctagggcgagggttctattaaatccctcaccggtgaaccactttgaacaacaa 9157075  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 97 - 146
Target Start/End: Complemental strand, 14489877 - 14489828
Alignment:
Q  97 aatagatggaatcaaattctaaataattaaccaaagtagaaaatgtcaat 146  Q
    |||||||||||| ||||||||| |||||||||| ||||| ||||| ||||    
T  14489877 aatagatggaataaaattctaattaattaaccagagtaggaaatgacaat 14489828  T

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Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 63 - 159
Target Start/End: Complemental strand, 193695 - 193601
Alignment:
Q  63 accaaattgatttgtaaaaatgaaatggtt-gaataatagatggaatcaaattctaaataattaaccaaagtagaaaatgtcaatgttttgtcttaaa 159  Q
    ||||||||||||| |||| ||||||||||| ||||||||||||   |||| | ||||||||||||| ||||||| | ||||||| ||||| |||||||    
T  193695 accaaattgatttataaagatgaaatggtttgaataatagatg---tcaattcctaaataattaactaaagtagtacatgtcaaggttttttcttaaa 193601  T

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Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 30 - 107
Target Start/End: Original strand, 32451537 - 32451616
Alignment:
Q  30 catttaagaaataattatcttannnnnnn-ccacaccaaattgatttgtaaaaatgaaatgg-ttgaataatagatggaa 107  Q
    ||||||||||||||||||||||        ||||||||||||||||| |||||||||||||| |||||||||||||||||    
T  32451537 catttaagaaataattatcttattttttttccacaccaaattgatttataaaaatgaaatggtttgaataatagatggaa 32451616  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 119 - 169
Target Start/End: Original strand, 32451661 - 32451711
Alignment:
Q  119 ataattaaccaaagtagaaaatgtcaatgttttgtcttaaatt-ttttcaca 169  Q
    ||||||||||||||||||||||||||| ||||| ||||||||| ||||||||    
T  32451661 ataattaaccaaagtagaaaatgtcaaggtttt-tcttaaattgttttcaca 32451711  T

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Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 171 - 214
Target Start/End: Original strand, 32452058 - 32452101
Alignment:
Q  171 acaaattgagaaaattattcaaaagaataggtataaaatattgg 214  Q
    ||||||| ||||||||||||||||||| | ||||||||||||||    
T  32452058 acaaattaagaaaattattcaaaagaacatgtataaaatattgg 32452101  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 97 - 144
Target Start/End: Original strand, 40842689 - 40842736
Alignment:
Q  97 aatagatggaatcaaattctaaataattaaccaaagtagaaaatgtca 144  Q
    |||||||||||| ||||||||| |||||||||||||||| ||||||||    
T  40842689 aatagatggaataaaattctaattaattaaccaaagtaggaaatgtca 40842736  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 97 - 151
Target Start/End: Original strand, 41959519 - 41959573
Alignment:
Q  97 aatagatggaatcaaattctaaataattaaccaaagtagaaaatgtcaatgtttt 151  Q
    |||||||||||| | ||||||| |||||||||||||||| |||||||||| ||||    
T  41959519 aatagatggaataagattctaattaattaaccaaagtaggaaatgtcaatatttt 41959573  T

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