View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11848_low_9 (Length: 262)
Name: NF11848_low_9
Description: NF11848
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11848_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 189; Significance: 1e-102; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 250
Target Start/End: Original strand, 15867122 - 15867371
Alignment:
| Q |
1 |
taccttcccagaaaaaggannnnnnncctgcatatcctttaggttagaaccgcaaacccaactctaattaaacagataaataaacgcgcgcacaaataca |
100 |
Q |
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| T |
15867122 |
taccttcccataaaaaggatttttttcctgcatatcctttatgttagaaccgcaaacccaactctaaataaacagataaataaaggcgcacacaaataca |
15867221 |
T |
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| Q |
101 |
attcttgattacaaagttctaccaattgcttctgtgtctgtgagagcaatgtggcagttgtaaattgtaattttctattatgcaaacatgtttaagattt |
200 |
Q |
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| T |
15867222 |
attcttgattacaaagttctaccaattgcttctgtgtctgtgagagcaatgtggcagttgtaaattgtaattttctattatgcaaaaatgcttaagattt |
15867321 |
T |
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| Q |
201 |
acatagttcaagatgtgtttaaatcctgcgctatgctcgttgcactttca |
250 |
Q |
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| T |
15867322 |
acatagtgcaagatgtgtttaaatcctgcgctacactcgttgcactttca |
15867371 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 1 - 250
Target Start/End: Original strand, 15860736 - 15860974
Alignment:
| Q |
1 |
taccttcccagaaaaaggannnnnnncctgcatatcctttaggttagaaccgcaaacccaactctaatt-aaacagataaataaacgcgcgcacaaatac |
99 |
Q |
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| T |
15860736 |
taccttcccataaaaaggaattctttcctgcatatcctttatgttagaacaacaaacccaactctaaagcaaacagataaattaaagcat--aggaatac |
15860833 |
T |
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| Q |
100 |
aattcttgattacaaagttctaccaattgcttctgtgtctgtgagagcaatgtggcagttgtaaattgtaattttctattatgcaaacatgtttaagatt |
199 |
Q |
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| T |
15860834 |
aatgcttgattacaaagttctaccaattgtgtctacgtctctgagagcaatgtggcag-------ttgtaattttctattgtgca---atgcttaagatt |
15860923 |
T |
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| Q |
200 |
tacatagttcaagatgtgtttaaatcctgcgctatgctcgttgcactttca |
250 |
Q |
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| T |
15860924 |
tacatagtacaagatgtgtttaaatacttccctgcgctcgttgcactttca |
15860974 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 69 - 250
Target Start/End: Original strand, 15846624 - 15846792
Alignment:
| Q |
69 |
taaacagataaataaacgcgcgcacaaatacaattcttgattacaaagttctaccaattgcttctgtgtctgtgagagcaatgtggcagttgtaaattgt |
168 |
Q |
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| T |
15846624 |
taaacagatagataaacgcgc--aagaatgcaatgcttgattacaaagttctaccaattgtgtttacgtctcagagagcaatgtggcag-------ttgt |
15846714 |
T |
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| Q |
169 |
aattttctattatgcaaacatgtttaagatttacatagttcaagatgtgtttaaatcctgcgctatgctcgttgcactttca |
250 |
Q |
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| T |
15846715 |
aattttctattatgca---atgcttaaga-ttacatagtacaagataagtttaaatacttcgctaagctcgttgctctttca |
15846792 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 15853374 - 15853461
Alignment:
| Q |
1 |
taccttcccagaaaaaggannnnnnncctgcatatcctttaggttagaaccgcaaacccaactct-aattaaacagataaataaacgc |
87 |
Q |
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| T |
15853374 |
taccttcccataaaaaggaattatttcctgcatatcctttatgttagaacagcaaacccaattctaaagtgaacagataaataaacgc |
15853461 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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