View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11849_high_1 (Length: 890)
Name: NF11849_high_1
Description: NF11849
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11849_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 650; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 650; E-Value: 0
Query Start/End: Original strand, 19 - 767
Target Start/End: Original strand, 39166097 - 39166846
Alignment:
| Q |
19 |
atccctatatagcaatgttacctcacataaagacgtgtttcgtgtctgatgcgtgtttgacactgacacaattaatcacttattannnnnnnnnaaaatt |
118 |
Q |
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| T |
39166097 |
atccctatatagcaatgttacctcacataaagacgtgtttggtgtcagatgcgtgtttgacactgacacaattaatcactttttaaaaaa----aaaatt |
39166192 |
T |
|
| Q |
119 |
ataattgatgcatacatgtcgttctcgctatgtgcttcatagccaaatttaaaactaattaattagtgtaatgcgtgtcaaataaccaccaccatcacct |
218 |
Q |
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| T |
39166193 |
atcattgatgcatacatgtcgttctcactatgtgcttcatagccaaatttaaaactaattaattagtgtaatgcgtgtcaaataaccaccaccatcacct |
39166292 |
T |
|
| Q |
219 |
ataaagcacgaacacatacacactaacacatcaaacgcagatcataatttcagttaattaaatataatcatgtgtcggtattgtatctatctgtgttaga |
318 |
Q |
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|||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39166293 |
ataaagcacgaacacatacacactaacacatcgaacacagatcataatttcagttaattaaatataatcatgtgtcggtattgtatctatctgtgttaga |
39166392 |
T |
|
| Q |
319 |
catcatatacgtctttaatttgaagtgtagtcgataaatagacaaccacagtaacccacattgttcataggaaaaatatattgagaattaaaaaaggaat |
418 |
Q |
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| T |
39166393 |
tatcatatatgtctttaatttcaagtgtagtcgataaatagacaaccacagtaacccacattattcataggaaaaatatattgagaattaaaaaaggaat |
39166492 |
T |
|
| Q |
419 |
acacaaaacaatttaatgcaatacgtcaaatgcatagtgtgaatcatgaatgaatgaatgcaattgaaaagggaatgagagtgacaaataccgtgatgta |
518 |
Q |
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| T |
39166493 |
acacaaaacaatttaatgcaatacgtcaaatgcatagtgtgaatcatgaatgaatgaatgcaattgaaaagggaatgagagtgacaaataccgtgatgta |
39166592 |
T |
|
| Q |
519 |
atcaaccgtgaaggaagcttgtggtgagttttatcacgtcaaagattgatcatttctcgttacaaaatttcatacgtagattagagattagtattcattt |
618 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
39166593 |
atcaaccgtgaaggaagcttgtggtgagttttatcacgtcaaagattgatcatttctcgttacaaaatttcattcgtagattagagattagtattcattt |
39166692 |
T |
|
| Q |
619 |
ctatcacttggaacaaaaacaaggcgtgtatatgttgagtcattttttgattcagatgtatttgagtcattttttgactcaaccgcgcggtatgtggttt |
718 |
Q |
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| T |
39166693 |
ctatcacttggaacaaaaacaaggcgtgtatatgttgagtcattttttgattcagatgtatttgagtcattttttgactcaaccgcgcggtatgtggttt |
39166792 |
T |
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| Q |
719 |
attttagcaaccg-----aaacaaactgcaacttaagagaaacaccaaattaaa |
767 |
Q |
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| T |
39166793 |
attttagcaaccgaaacaaaacaaactgcaatttaagagaaacaccaaattaaa |
39166846 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 716 - 758
Target Start/End: Complemental strand, 50311187 - 50311145
Alignment:
| Q |
716 |
tttattttagcaaccgaaacaaactgcaacttaagagaaacac |
758 |
Q |
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| T |
50311187 |
tttattttagcaaccgaaccaaactgcaacataaaagaaacac |
50311145 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 664 - 703
Target Start/End: Original strand, 41983705 - 41983744
Alignment:
| Q |
664 |
tttgattcagatgtatttgagtcattttttgactcaaccg |
703 |
Q |
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|||| ||||||||||||||||||||||||||||||||||| |
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| T |
41983705 |
tttgcttcagatgtatttgagtcattttttgactcaaccg |
41983744 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 716 - 758
Target Start/End: Original strand, 54273512 - 54273554
Alignment:
| Q |
716 |
tttattttagcaaccgaaacaaactgcaacttaagagaaacac |
758 |
Q |
| |
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|||||||||||||||||| ||||| ||||| |||||||||||| |
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| T |
54273512 |
tttattttagcaaccgaaccaaaccgcaacataagagaaacac |
54273554 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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