View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11849_high_12 (Length: 411)
Name: NF11849_high_12
Description: NF11849
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11849_high_12 |
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Alignment Details
Target: chr2 (Bit Score: 392; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 1 - 396
Target Start/End: Complemental strand, 15214806 - 15214411
Alignment:
| Q |
1 |
ctactaagttgtgacattaacctagctgttgtgtcatgttgaacattctgtttgctactaccttgttgaaagtttaaggtaataggtcctttatgaacac |
100 |
Q |
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| T |
15214806 |
ctactaagttgtgacattaacctagctgttgtgtcatgttgaacattctgtttgctactaccttgttgaaagtttaaggtaataggtcctttatgaacac |
15214707 |
T |
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| Q |
101 |
ctagcgacgacgacgaggacaaagttgtactaggacaaccagtgaattgttgcacaagttgtctaaaattggttgtatttgcattgagtagtgttgttgg |
200 |
Q |
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| T |
15214706 |
ctagcgacgacgacgaggacaaagttgtactaggacaaccagtgaattgttgcacaagttgtctaaaattggttgtatttgcattgagtagtgttgttgg |
15214607 |
T |
|
| Q |
201 |
tgttctcttagaagctctagatcttcttctaattggtttggatatattaccaccctttggtgtcaattggtcactagtgtttgtgtatgaatttgttggg |
300 |
Q |
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| T |
15214606 |
tgttctcttagaagctctagatcttcttctaattggtttggatatattaccaccctttggtgtcaattggtcactagtgtttgtgtatgaatttgttggg |
15214507 |
T |
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| Q |
301 |
ctcaaaatcatagtctctaatggaacaggatttgttgtcatcacagttgaatcagagaaattttctataggtggtggatttagagtatgatccatg |
396 |
Q |
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| T |
15214506 |
ctcaaaatcatagtctctaatggaataggatttgttgtcatcacagttgaatcagagaaattttctataggtggtggatttagagtatgatccatg |
15214411 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 261 - 311
Target Start/End: Complemental strand, 26777185 - 26777135
Alignment:
| Q |
261 |
tgtcaattggtcactagtgtttgtgtatgaatttgttgggctcaaaatcat |
311 |
Q |
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||||||||||| |||| |||||||||||||||||||||||||||||||||| |
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| T |
26777185 |
tgtcaattggtaactactgtttgtgtatgaatttgttgggctcaaaatcat |
26777135 |
T |
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