View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11849_high_13 (Length: 400)
Name: NF11849_high_13
Description: NF11849
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11849_high_13 |
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Alignment Details
Target: chr5 (Bit Score: 352; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 18 - 390
Target Start/End: Original strand, 12346877 - 12347249
Alignment:
| Q |
18 |
ctttcctctctcttgatcactcactcaacctcacatgcaaacatggttaggctcaaaaattcacagaaaagaataaatcattttttgttctgtcagtcca |
117 |
Q |
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| T |
12346877 |
ctttcctctctcttgatcactcactcaacctcacatgcaaacatggttaggctcaaaaattcacagaaaagaataaatcattttttgttctgtcagtcca |
12346976 |
T |
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| Q |
118 |
caagccatgaacatccaaaatccatgatggtgtaattataatatatactctcttcaaagtaatacacacactcctactcttcaaagtagtagtatttgtt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12346977 |
caagccatgaacatccaaaatccatgatggtgtaattataatatatactctcttcaaagtaatacacacactcctactcttcaaagtagtagtatttgtt |
12347076 |
T |
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| Q |
218 |
attttccaaaaatcttccttnnnnnnntagaaatatctctttccttaggattttgtggggttcaaacattaggctcttgtatggggcccaacaaatgaga |
317 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12347077 |
attttccaaaaatcttccttaaaaaaatagaaatatctctttccttaggattttgtggggttcaaacattaggctcttgtatggggcccaacaaatgaga |
12347176 |
T |
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| Q |
318 |
aacttagtgccaaagctaagcccttgtagtcccataattagaaatcttgaaaccaaagcaaatattccctttg |
390 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12347177 |
aacttagtgccaaagctaagcccttgtagtcccataattagaaatcttgaaaccaaagcaaatattccctttg |
12347249 |
T |
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