View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11849_high_17 (Length: 368)
Name: NF11849_high_17
Description: NF11849
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11849_high_17 |
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Alignment Details
Target: chr2 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 19 - 350
Target Start/End: Complemental strand, 41380524 - 41380191
Alignment:
| Q |
19 |
gatgtctattttctctatgattgatttatttgctgccaataaactatctattttccaatttcaatgtacataattgagtttcaattgaagaacaaatgaa |
118 |
Q |
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| T |
41380524 |
gatgtctattttctctatgattgatttatttgctgccaataaactatctattttccaatttcaatgtacataattgagtttcaattgaagaacaaatgaa |
41380425 |
T |
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| Q |
119 |
ggaaattgcttctattcaatgatattttt-gtgtgtggaagattcaatgannnnnnnnncttgcttaaatgttttaagtgaagctttttt-ggtgagact |
216 |
Q |
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| T |
41380424 |
ggaaattgcttgtattcaatgatattttttgtgtgtggaagattcaatgatttttttttcttgcttaaatgttttaagtgaagctttttttggggagact |
41380325 |
T |
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| Q |
217 |
ttggttggtgtttgtatagcatctataatagatgcttgaatgaagtacaaaacttagaaagtgtaaaaatagatgagaaaattaaactacagatacatta |
316 |
Q |
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| T |
41380324 |
ttggttggtgtttgtatagcatctataatagatgcttgaatgaagtacaaaacttagaaagtgtaaaaatggatgagaaaattaaactacagatacatta |
41380225 |
T |
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| Q |
317 |
tatgagctaggttttgtaattttgttgaagatgt |
350 |
Q |
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| T |
41380224 |
tatgagctaggttttgtaattttgttgaagatgt |
41380191 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 91; Significance: 5e-44; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 27 - 167
Target Start/End: Original strand, 8043677 - 8043819
Alignment:
| Q |
27 |
ttttctctatgattgatttatttgctgccaataaactatctattttccaatttcaatgtacataattgagtttcaattgaagaac-aaatgaaggaaatt |
125 |
Q |
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| T |
8043677 |
ttttctctatgatttgtttattttctgccaatgaactatctatttttcaatttcaatgtacatatttgagtttcaatggtagaacaaaatgaaggaaatt |
8043776 |
T |
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| Q |
126 |
gcttctattcaatgata-tttttgtgtgtggaagattcaatga |
167 |
Q |
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| T |
8043777 |
gtttctattcaatgatattttttgtgtgtggaagattcaatga |
8043819 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 27 - 100
Target Start/End: Original strand, 8033741 - 8033814
Alignment:
| Q |
27 |
ttttctctatgattgatttatttgctgccaataaactatctattttccaatttcaatgtacataattgagtttc |
100 |
Q |
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| T |
8033741 |
ttttctctatgatttatttattttctgccaatgaactatctattttccaatttcaatgtacataactgagtttc |
8033814 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 233 - 354
Target Start/End: Original strand, 8033905 - 8034031
Alignment:
| Q |
233 |
tagcatctataatagatgcttgaatgaagtacaaaacttagaaagtgt---aaaaatagatgagaaaattaaactacagatacattata----tgagcta |
325 |
Q |
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| T |
8033905 |
tagcatctataatagatgcttggttgaagtacaaaa-ttagaaagtattaaaaaaaaaaatgagaaa-ttaagctacagatacattatatatatgagcta |
8034002 |
T |
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| Q |
326 |
ggttttgtaattttgttgaagatgttcat |
354 |
Q |
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| T |
8034003 |
ggttttgtaattttgttgaagatgttcat |
8034031 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 233 - 354
Target Start/End: Complemental strand, 7969879 - 7969749
Alignment:
| Q |
233 |
tagcatctataatagatgcttgaatgaagtacaaaacttagaaagtgtaaaaa-------tagatgagaaaattaaactacagatacattatat----ga |
321 |
Q |
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| T |
7969879 |
tagcatctataatagatgcttgattgaagtacaaaa-ttagaaagtattaaaaaaatatatatatgagaaa-ttaagctacagatacattatatatatga |
7969782 |
T |
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| Q |
322 |
gctaggttttgtaattttgttgaagatgttcat |
354 |
Q |
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| T |
7969781 |
gctaggttttgtaattttgttgaagatgttcat |
7969749 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 238 - 342
Target Start/End: Original strand, 8043890 - 8043995
Alignment:
| Q |
238 |
tctataatagatgcttgaatgaagtacaaaacttagaaagtgtaaaaatagatgagaaaa-ttaaactacagatacattatatgagctaggttttgtaat |
336 |
Q |
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| T |
8043890 |
tctataatagatgcttgattgatgtacaacacatagaaactatgaaaaaggatgagaaaaattaaactacagatacataatatgagttaggttttataat |
8043989 |
T |
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| Q |
337 |
tttgtt |
342 |
Q |
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| T |
8043990 |
tttgtt |
8043995 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 45 - 100
Target Start/End: Complemental strand, 7970025 - 7969970
Alignment:
| Q |
45 |
tatttgctgccaataaactatctattttccaatttcaatgtacataattgagtttc |
100 |
Q |
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| T |
7970025 |
tattttctggcaatgaactatctattttccaatttcaatgcacataactgagtttc |
7969970 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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