View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11849_high_19 (Length: 340)
Name: NF11849_high_19
Description: NF11849
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11849_high_19 |
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Alignment Details
Target: chr2 (Bit Score: 294; Significance: 1e-165; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 18 - 327
Target Start/End: Complemental strand, 17316940 - 17316631
Alignment:
| Q |
18 |
cattttgactatattttgatatatagtcaatcgcattctaaatgtttgtgaaattgtctctaaaattgatttatacgcaaaatgataagctaagaccaag |
117 |
Q |
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| T |
17316940 |
cattttgactatattttgatatatagtcaatcgcattctaaatgtttgtgaaattgtctctaaaattgatttatacgcaaaatgataagctaagaccaag |
17316841 |
T |
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| Q |
118 |
ccatctctgtcctggttgttcttctggaaggatatatatttttaggattgatgtgatttcatgtggtttatgtcctacatagcatcgacatttgcattcc |
217 |
Q |
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| T |
17316840 |
ccatctctgtcctggttgttcttttggaaggatatatatttttaggattgatgtgatttcatgtggtttatgtcctacatagcatcaacatttgcattcc |
17316741 |
T |
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| Q |
218 |
atttgaaggtgtgtcagtgtctgacatcgaacatttggttacattcaattattccatcttttttctttaaattattacgagtgtcatgtccagtgtgtgc |
317 |
Q |
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| T |
17316740 |
atttgaaggtgtgtcagtgtctgacatcgaacatttggttacattcaattattccatcttttttcttcaaattattacgagtgtcgtgtccagtgtgtgc |
17316641 |
T |
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| Q |
318 |
tttgtagtct |
327 |
Q |
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| T |
17316640 |
tttgtagtct |
17316631 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 25 - 122
Target Start/End: Complemental strand, 17317115 - 17317017
Alignment:
| Q |
25 |
actatattttgatatatagtcaatcgcattctaaatgtttgtgaaattgtctctaaaattgatttatac-gcaaaatgataagctaagaccaagccatc |
122 |
Q |
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| T |
17317115 |
actataatttggtatatagtcaatcgcgttctaaatgtttgcaaaattgtctttgaaattgaattatactgcaaaatgataggctaaaaccaagccatc |
17317017 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 115 - 160
Target Start/End: Complemental strand, 17301524 - 17301479
Alignment:
| Q |
115 |
aagccatctctgtcctggttgttcttctggaaggatatatattttt |
160 |
Q |
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| T |
17301524 |
aagccatctatgtcttggttgttattttggaaggatatatattttt |
17301479 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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