View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11849_high_20 (Length: 330)
Name: NF11849_high_20
Description: NF11849
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11849_high_20 |
 | |
|
| [»] chr3 (2 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 226; Significance: 1e-124; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 46 - 330
Target Start/End: Original strand, 8332134 - 8332415
Alignment:
| Q |
46 |
ctgtgcaagtgtgcaaagctgaaatgatttaggtaatttaacttggtctatttatagggtcaccatatcatagtatataattcctaccttnnnnnnntta |
145 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||| | |
|
|
| T |
8332134 |
ctgtgcaagtgtgcaaagctgaaatgatttaggtaatttaacttggtctatttatagtgtcaccatatcatagtatataattccttgcttaaaaaaaaaa |
8332233 |
T |
|
| Q |
146 |
tcataggatataatactaaaaaggttaggaagttatcgttagtattattatttcaaaagttattttgcacttgtttcatttcttcatcttttaactacat |
245 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8332234 |
tcataggatataatagtaaaaaggttaggaagttatcgtta---ttattatttcaaaagttattttgcacttgtttcatttcttcatcttttaactacat |
8332330 |
T |
|
| Q |
246 |
tttctaagattttttacgtgggttttctgttgtgtttggataatccgtctttactcattttattctacttatttttaataataat |
330 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8332331 |
tttctaagattttttacgtgggttttctgttgtgtttggataatccgtctttactcattttattctacttatttttaataataat |
8332415 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 94 - 329
Target Start/End: Original strand, 8340847 - 8341094
Alignment:
| Q |
94 |
tatttatagggtcaccatatcatagtatataattcctaccttnnnnnnnttatcataggatataatactaaaaaggttaggaagttatcgttagtattat |
193 |
Q |
| |
|
||||||| | |||| ||||||||||||||||| |||| |||| | |||||||||||||||||||||||||||||||||||| || | |||||| |
|
|
| T |
8340847 |
tatttatggtgtcatcatatcatagtatataaatccttccttaaataaat-atcataggatataatactaaaaaggttaggaagtta-cgat--tattat |
8340942 |
T |
|
| Q |
194 |
tatttcaaaagttat---------------tttgcacttgtttcatttcttcatcttttaactacattttctaagattttttacgtgggttttctgttgt |
278 |
Q |
| |
|
||||||||||||||| ||||||| ||||||||||||||||||||||||||| ||||||| |||||||||||||||||||| ||||| |
|
|
| T |
8340943 |
tatttcaaaagttattcaaaattattttattttgcacatgtttcatttcttcatcttttaactaccttttctatgattttttacgtgggttttcggttgt |
8341042 |
T |
|
| Q |
279 |
gtttggataatcc-gtctttactcattttattctacttatttttaataataa |
329 |
Q |
| |
|
||||| |||||| ||||||||||| |||||||||||||| ||||||||||| |
|
|
| T |
8341043 |
gtttgattaatccagtctttactcaatttattctacttatatttaataataa |
8341094 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University