View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11849_high_22 (Length: 325)
Name: NF11849_high_22
Description: NF11849
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11849_high_22 |
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Alignment Details
Target: chr4 (Bit Score: 222; Significance: 1e-122; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 82 - 311
Target Start/End: Original strand, 6601108 - 6601337
Alignment:
| Q |
82 |
tggatcataagtttctgtgtaaactcattatattgttagatttttggtatttgactgtgttttgaattcattactgttgttttctagggaacatgattaa |
181 |
Q |
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| T |
6601108 |
tggatcataagtttctgtgtaaactcattatattgttagatttttggtatttgactgtgttttgaattcattactgttgttttctaaggaacatgattaa |
6601207 |
T |
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| Q |
182 |
gttccaagtactttcatatgaattctgaaggtttaatatttatataatcaaaagggctattttgtattatttttcacacaagtattaaatatcattactc |
281 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6601208 |
gttccaagtactttcatatgaattctgaaggtttaatatttatataatcaaaagggctattttgtattatttttcacacaagtattaaatatcattactc |
6601307 |
T |
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| Q |
282 |
tgcttggaaagttttgatttctcttctgtg |
311 |
Q |
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| T |
6601308 |
tccttggaaagttttgatttctcttctgtg |
6601337 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 20 - 80
Target Start/End: Original strand, 6598749 - 6598809
Alignment:
| Q |
20 |
gtgccatcaaggttcggtttctttctcttcttttgtagtttgtattcaccactcctttcag |
80 |
Q |
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| T |
6598749 |
gtgccttcaaggtacggtttctttctcttcttttgtggtttgtattcaccactcctttcag |
6598809 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 86 - 311
Target Start/End: Complemental strand, 3702431 - 3702206
Alignment:
| Q |
86 |
tcataagtttctgtgtaaactcattatattgttagatttttggtatttgactgtgttttgaattcattactgttgttttctagggaacatgattaagttc |
185 |
Q |
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| T |
3702431 |
tcataagtttctgtgtaaactcattatattgttagatttttggtatttgattgtgttttgaattcattactgttgttttctatggaacatgataaagctc |
3702332 |
T |
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| Q |
186 |
caagtactttcatatgaattctgaaggtttaatatttatataatcaaaagggctattttgtattatttttcacacaagtattaaatatcattactctgct |
285 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||| || |
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| T |
3702331 |
caagtactttcatatgaattctgaaggtttgatatttatataatcaaaagggctattttgtattatttttccaacaaatattaaatatcattactctcct |
3702232 |
T |
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| Q |
286 |
tggaaagttttgatttctcttctgtg |
311 |
Q |
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| T |
3702231 |
tggaaagttttgatttctcttctgtg |
3702206 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 20 - 79
Target Start/End: Original strand, 13069798 - 13069857
Alignment:
| Q |
20 |
gtgccatcaaggttcggtttctttctcttcttttgtagtttgtattcaccactcctttca |
79 |
Q |
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||||| ||||||||||||||||| ||| |||| || ||||||||||||||||||||||| |
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| T |
13069798 |
gtgccttcaaggttcggtttcttcctcatcttaggtggtttgtattcaccactcctttca |
13069857 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 20 - 79
Target Start/End: Original strand, 15896119 - 15896178
Alignment:
| Q |
20 |
gtgccatcaaggttcggtttctttctcttcttttgtagtttgtattcaccactcctttca |
79 |
Q |
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| T |
15896119 |
gtgccttcaaggtttggtttcttcctcatcttaggtggtttgtattcaccactcctttca |
15896178 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 79
Target Start/End: Original strand, 15234411 - 15234464
Alignment:
| Q |
26 |
tcaaggttcggtttctttctcttcttttgtagtttgtattcaccactcctttca |
79 |
Q |
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| T |
15234411 |
tcaaggtttggtttcttcctcgtcttaggtcgtttgtattcaccactcctttca |
15234464 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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