View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11849_high_25 (Length: 299)

Name: NF11849_high_25
Description: NF11849
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11849_high_25
NF11849_high_25
[»] chr3 (2 HSPs)
chr3 (110-285)||(8332524-8332715)
chr3 (9-37)||(8332423-8332451)
[»] chr4 (1 HSPs)
chr4 (131-204)||(31174127-31174200)
[»] chr1 (1 HSPs)
chr1 (229-276)||(16302843-16302890)
[»] scaffold0024 (1 HSPs)
scaffold0024 (131-204)||(70420-70493)


Alignment Details
Target: chr3 (Bit Score: 102; Significance: 1e-50; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 110 - 285
Target Start/End: Original strand, 8332524 - 8332715
Alignment:
Q  110 tcacattattcaattctgagaaattcttttctcttttattttttccaatatatgtgtatgcctaatcactttttatttgtgtttatgaccaagt-agtat 208  Q
    |||||| |||||||| |||||||||| |||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||| |||| |||||    
T  8332524 tcacatcattcaattatgagaaattcatttctcttttattttttccaatttatgtgcatgcctaatcactttttatttgtgtttatgactaagtaagtat 8332623  T
Q  209 ttctctaattatgtattt---------------attccattccattctattccaccacttgccgccaacccaaacataacctagatattttt 285  Q
    ||||||||||  ||||||               |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8332624 ttctctaattgagtatttattccattccatttaattccattccattctattccaccacttgccgccaacccaaacataacctagatattttt 8332715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 9 - 37
Target Start/End: Original strand, 8332423 - 8332451
Alignment:
Q  9 tgttaattcggtagagcaagtcttgcata 37  Q
    |||||||||||||||||||||||||||||    
T  8332423 tgttaattcggtagagcaagtcttgcata 8332451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 131 - 204
Target Start/End: Original strand, 31174127 - 31174200
Alignment:
Q  131 aattcttttctcttttattttttccaatatatgtgtatgcctaatcactttttatttgtgtttatgaccaagta 204  Q
    |||| |||||||||||| ||||| |||| ||||||| ||  |||||||||||| || |||||||||||||||||    
T  31174127 aattattttctcttttaattttttcaatttatgtgtgtgtttaatcacttttttttcgtgtttatgaccaagta 31174200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 229 - 276
Target Start/End: Original strand, 16302843 - 16302890
Alignment:
Q  229 tccattccattctattccaccacttgccgccaacccaaacataaccta 276  Q
    |||||||||||| ||||||||||||||| |||| ||||||||| ||||    
T  16302843 tccattccattccattccaccacttgccaccaatccaaacatagccta 16302890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 131 - 204
Target Start/End: Original strand, 70420 - 70493
Alignment:
Q  131 aattcttttctcttttattttttccaatatatgtgtatgcctaatcactttttatttgtgtttatgaccaagta 204  Q
    |||| |||||||||||| ||||  |||| ||||||  || |||| |||||||||||||||||| ||| ||||||    
T  70420 aattattttctcttttaattttatcaatttatgtgcgtgtctaaccactttttatttgtgtttgtgaacaagta 70493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University